Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CCDC61Q9Y6R9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC61Q9Y6R9 RNA5SP450-201ENST00000411206 102 ntBASIC3.11□□□□□ -1.91
CCDC61Q9Y6R9 MIR6766-201ENST00000622641 72 ntBASIC3.11□□□□□ -1.91
CCDC61Q9Y6R9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC61Q9Y6R9 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 Y_RNA.379-201ENST00000365653 102 ntBASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 MIR7-2-201ENST00000384970 110 ntBASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 RNU7-13P-201ENST00000516413 62 ntBASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC61Q9Y6R9 MIR125B2-201ENST00000385128 89 ntBASIC3.09□□□□□ -1.91
CCDC61Q9Y6R9 MIR3657-201ENST00000584818 117 ntBASIC3.09□□□□□ -1.91
CCDC61Q9Y6R9 MIR219B-201ENST00000637023 88 ntBASIC3.09□□□□□ -1.91
CCDC61Q9Y6R9 AL359851.1-201ENST00000569460 4997 ntBASIC3.09□□□□□ -1.92
CCDC61Q9Y6R9 SNORA67.3-201ENST00000384366 140 ntBASIC3.08□□□□□ -1.92
CCDC61Q9Y6R9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC61Q9Y6R9 SNORD83.1-201ENST00000411362 77 ntBASIC3.08□□□□□ -1.92
CCDC61Q9Y6R9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC61Q9Y6R9 AC244505.6-201ENST00000452829 130 ntBASIC3.07□□□□□ -1.92
CCDC61Q9Y6R9 snoU13.21-201ENST00000459368 105 ntBASIC3.07□□□□□ -1.92
CCDC61Q9Y6R9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC61Q9Y6R9 RNA5SP245-201ENST00000364239 121 ntBASIC3.06□□□□□ -1.92
CCDC61Q9Y6R9 MIR4529-201ENST00000578110 78 ntBASIC3.06□□□□□ -1.92
CCDC61Q9Y6R9 AC008608.1-201ENST00000603910 127 ntBASIC3.06□□□□□ -1.92
CCDC61Q9Y6R9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC61Q9Y6R9 RNU6-934P-201ENST00000365154 107 ntBASIC3.05□□□□□ -1.92
CCDC61Q9Y6R9 AC108210.2-201ENST00000503681 201 ntBASIC3.05□□□□□ -1.92
CCDC61Q9Y6R9 RNA5SP200-201ENST00000516360 103 ntBASIC3.05□□□□□ -1.92
CCDC61Q9Y6R9 MIR4658-201ENST00000584344 65 ntBASIC3.05□□□□□ -1.92
CCDC61Q9Y6R9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 SNORD60.1-201ENST00000362451 73 ntBASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 RNU6-260P-201ENST00000384092 107 ntBASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 RNU6-1089P-201ENST00000516473 104 ntBASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 AL645939.4-201ENST00000604495 135 ntBASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 MIR6733-201ENST00000635723 61 ntBASIC3.04□□□□□ -1.92
CCDC61Q9Y6R9 RNU6-1312P-201ENST00000362425 108 ntBASIC3.03□□□□□ -1.92
CCDC61Q9Y6R9 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC61Q9Y6R9 MIR4771-2-201ENST00000577758 74 ntBASIC3.03□□□□□ -1.92
CCDC61Q9Y6R9 MIR4771-1-201ENST00000582617 74 ntBASIC3.03□□□□□ -1.92
CCDC61Q9Y6R9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC61Q9Y6R9 RNU6-482P-201ENST00000391068 107 ntBASIC3.02□□□□□ -1.93
CCDC61Q9Y6R9 RN7SKP123-201ENST00000410732 291 ntBASIC3.02□□□□□ -1.93
CCDC61Q9Y6R9 MAPK10-266ENST00000641066 6555 ntBASIC3.02□□□□□ -1.93
CCDC61Q9Y6R9 RNU6-1126P-201ENST00000384002 107 ntBASIC3.01□□□□□ -1.93
CCDC61Q9Y6R9 SNORA31.11-201ENST00000516528 139 ntBASIC3.01□□□□□ -1.93
CCDC61Q9Y6R9 MIR548V-201ENST00000584165 80 ntBASIC3.01□□□□□ -1.93
CCDC61Q9Y6R9 SNORA2.1-201ENST00000363089 137 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 VTRNA1-1-201ENST00000363120 99 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 SNORA75.1-201ENST00000391130 148 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 5S_rRNA.2-201ENST00000391293 112 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 AL603825.1-201ENST00000438481 80 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 RNA5SP385-201ENST00000515947 110 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 MIR4506-201ENST00000584693 77 ntBASIC3□□□□□ -1.93
CCDC61Q9Y6R9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC61Q9Y6R9 RNU6-364P-201ENST00000384387 107 ntBASIC2.99□□□□□ -1.93
CCDC61Q9Y6R9 HMGN2P23-201ENST00000456759 269 ntBASIC2.99□□□□□ -1.93
CCDC61Q9Y6R9 AC055731.1-201ENST00000474387 401 ntBASIC2.99□□□□□ -1.93
CCDC61Q9Y6R9 RNU6-656P-201ENST00000516785 107 ntBASIC2.99□□□□□ -1.93
CCDC61Q9Y6R9 MIR548O2-201ENST00000616090 70 ntBASIC2.99□□□□□ -1.93
CCDC61Q9Y6R9 SNORD113.3-201ENST00000364630 78 ntBASIC2.98□□□□□ -1.93
CCDC61Q9Y6R9 uc_338.10-201ENST00000621872 182 ntBASIC2.98□□□□□ -1.93
CCDC61Q9Y6R9 MIR6132-201ENST00000622083 109 ntBASIC2.98□□□□□ -1.93
CCDC61Q9Y6R9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC61Q9Y6R9 RNU6-753P-201ENST00000363926 107 ntBASIC2.97□□□□□ -1.93
CCDC61Q9Y6R9 RNU6-520P-201ENST00000384717 104 ntBASIC2.97□□□□□ -1.93
CCDC61Q9Y6R9 SNORA48.3-201ENST00000391081 134 ntBASIC2.97□□□□□ -1.93
CCDC61Q9Y6R9 SNORA31.25-201ENST00000517242 134 ntBASIC2.97□□□□□ -1.93
CCDC61Q9Y6R9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.97□□□□□ -1.93
CCDC61Q9Y6R9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
CCDC61Q9Y6R9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
CCDC61Q9Y6R9 MIR617-201ENST00000385030 97 ntBASIC2.96□□□□□ -1.94
CCDC61Q9Y6R9 MIR3664-201ENST00000579074 99 ntBASIC2.96□□□□□ -1.94
CCDC61Q9Y6R9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
CCDC61Q9Y6R9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
CCDC61Q9Y6R9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 RNA5SP99-201ENST00000364020 114 ntBASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 RNU6-54P-201ENST00000365563 107 ntBASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 RNU6-902P-201ENST00000517212 91 ntBASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 MIR548AG2-201ENST00000581228 64 ntBASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 MIR6739-201ENST00000622461 75 ntBASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.95□□□□□ -1.94
CCDC61Q9Y6R9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 ZNF355P-201ENST00000427301 3216 ntBASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 RNU6-439P-201ENST00000384188 106 ntBASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 RNU1-52P-201ENST00000384190 164 ntBASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 AC067940.1-201ENST00000458411 300 ntBASIC2.94□□□□□ -1.94
CCDC61Q9Y6R9 MIR548C-201ENST00000384815 97 ntBASIC2.92□□□□□ -1.94
CCDC61Q9Y6R9 MIR524-201ENST00000385242 87 ntBASIC2.92□□□□□ -1.94
CCDC61Q9Y6R9 RNA5SP147-201ENST00000516493 109 ntBASIC2.92□□□□□ -1.94
CCDC61Q9Y6R9 MIR4676-201ENST00000583078 72 ntBASIC2.92□□□□□ -1.94
CCDC61Q9Y6R9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC61Q9Y6R9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC61Q9Y6R9 Y_RNA.330-201ENST00000365230 109 ntBASIC2.91□□□□□ -1.94
CCDC61Q9Y6R9 RNA5SP212-201ENST00000391223 107 ntBASIC2.91□□□□□ -1.94
CCDC61Q9Y6R9 SNORA26.9-201ENST00000391322 122 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 175.2 ms