Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.13□□□□□ -2.39
CHMP1AQ9HD42 RNA5SP128-201ENST00000365305 116 ntBASIC0.12□□□□□ -2.39
CHMP1AQ9HD42 SNORD38.2-201ENST00000384470 69 ntBASIC0.12□□□□□ -2.39
CHMP1AQ9HD42 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
CHMP1AQ9HD42 RPL39P34-201ENST00000477141 156 ntBASIC0.12□□□□□ -2.39
CHMP1AQ9HD42 RNU6-971P-201ENST00000516920 106 ntBASIC0.12□□□□□ -2.39
CHMP1AQ9HD42 AL512310.12-203ENST00000640543 90 ntBASIC0.12□□□□□ -2.39
CHMP1AQ9HD42 Y_RNA.247-201ENST00000364500 92 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 RNU6-524P-201ENST00000384270 107 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 Y_RNA.525-201ENST00000384570 113 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 MIR516A2-201ENST00000384888 90 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 MIR499A-201ENST00000384903 122 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 MIR516A1-201ENST00000385033 90 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 RNU6-127P-201ENST00000390897 107 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 RNU7-107P-201ENST00000459121 61 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 RNU7-129P-201ENST00000516128 62 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 MTND5P40-201ENST00000559945 246 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 MIR3124-201ENST00000582636 67 ntBASIC0.11□□□□□ -2.39
CHMP1AQ9HD42 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 SNORA42.1-201ENST00000363515 137 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 Y_RNA.323-201ENST00000365157 109 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 Y_RNA.346-201ENST00000365385 112 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 Y_RNA.362-201ENST00000365518 110 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 MIR539-201ENST00000365690 78 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 RNA5SP220-201ENST00000516298 104 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 RNU6-1018P-201ENST00000516577 106 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 MIR3920-201ENST00000581751 86 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 MIR6734-201ENST00000621166 68 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 MIR499B-201ENST00000636498 73 ntBASIC0.1□□□□□ -2.39
CHMP1AQ9HD42 AL157777.2-201ENST00000258070 137 ntBASIC0.09□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.155-201ENST00000363632 101 ntBASIC0.09□□□□□ -2.4
CHMP1AQ9HD42 RNU6-409P-201ENST00000384114 104 ntBASIC0.09□□□□□ -2.4
CHMP1AQ9HD42 MT-TR-201ENST00000387439 65 ntBASIC0.09□□□□□ -2.4
CHMP1AQ9HD42 RNU6-1265P-201ENST00000516342 103 ntBASIC0.09□□□□□ -2.4
CHMP1AQ9HD42 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.09□□□□□ -2.4
CHMP1AQ9HD42 RNA5SP214-201ENST00000363378 118 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 SNORD38.1-201ENST00000363863 68 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 SNORD114-9-201ENST00000364370 72 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.507-201ENST00000384500 99 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 RNU6-816P-201ENST00000390914 107 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 RNA5SP299-201ENST00000391203 116 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 RNU6-1268P-201ENST00000391214 107 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 RNU6-1239P-201ENST00000391310 107 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 RNA5SP193-201ENST00000410353 107 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 SPINT5P-201ENST00000448174 155 ntBASIC0.08□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.85-201ENST00000363014 111 ntBASIC0.07□□□□□ -2.4
CHMP1AQ9HD42 MIR548G-201ENST00000408442 89 ntBASIC0.07□□□□□ -2.4
CHMP1AQ9HD42 AC104408.1-201ENST00000605241 170 ntBASIC0.07□□□□□ -2.4
CHMP1AQ9HD42 uc_338.28-201ENST00000612082 187 ntBASIC0.07□□□□□ -2.4
CHMP1AQ9HD42 AL162726.3-218ENST00000636401 95 ntBASIC0.07□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.173-201ENST00000363776 113 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 RNU6-1201P-201ENST00000384227 107 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 MIR501-201ENST00000390204 84 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 RNU7-13P-201ENST00000516413 62 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 MIR5706-201ENST00000579841 80 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 MIR3133-201ENST00000583157 78 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 RNU6-90P-201ENST00000606352 106 ntBASIC0.06□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.218-201ENST00000364218 104 ntBASIC0.05□□□□□ -2.4
CHMP1AQ9HD42 MIR643-201ENST00000385267 97 ntBASIC0.05□□□□□ -2.4
CHMP1AQ9HD42 AL035470.1-201ENST00000622571 220 ntBASIC0.05□□□□□ -2.4
CHMP1AQ9HD42 MIR3914-2-201ENST00000637339 95 ntBASIC0.05□□□□□ -2.4
CHMP1AQ9HD42 MIR924-201ENST00000638017 53 ntBASIC0.05□□□□□ -2.4
CHMP1AQ9HD42 AC073869.9-201ENST00000641610 120 ntBASIC0.05□□□□□ -2.4
CHMP1AQ9HD42 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 SNORD36A-201ENST00000362874 73 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 RNU6-774P-201ENST00000363238 107 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 RNU6-80P-201ENST00000384195 107 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 RNU6-1254P-201ENST00000391266 104 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 MIR1912-201ENST00000410389 80 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.703-201ENST00000516846 111 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.712-201ENST00000517011 92 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 MIR4679-2-201ENST00000578358 77 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 AL442128.1-201ENST00000615151 90 ntBASIC0.04□□□□□ -2.4
CHMP1AQ9HD42 Y_RNA.57-201ENST00000362806 113 ntBASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 RNU6-42P-201ENST00000384165 107 ntBASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 MIR548H2-201ENST00000408874 88 ntBASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 RNA5SP484-201ENST00000458857 111 ntBASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 MIR548AG2-201ENST00000581228 64 ntBASIC0.03□□□□□ -2.4
CHMP1AQ9HD42 SNORD50.2-201ENST00000365465 70 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 Y_RNA.649-201ENST00000459077 103 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 RNU6-659P-201ENST00000516454 104 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 RNU6-782P-201ENST00000516852 104 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 AC007012.1-201ENST00000567192 175 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 NAMPTP3-201ENST00000569273 224 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 MIR548AD-201ENST00000584780 82 ntBASIC0.02□□□□□ -2.41
CHMP1AQ9HD42 Y_RNA.71-201ENST00000362892 104 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 RNU6-509P-201ENST00000363519 107 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 RNA5SP325-201ENST00000363756 130 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 RNU6-1062P-201ENST00000383908 107 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 Y_RNA.549-201ENST00000384657 102 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 MIR613-201ENST00000385248 95 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 RNU6-243P-201ENST00000391140 107 ntBASIC0.01□□□□□ -2.41
CHMP1AQ9HD42 Y_RNA.377-201ENST00000365644 108 ntBASIC0□□□□□ -2.41
CHMP1AQ9HD42 RNU6-746P-201ENST00000384112 109 ntBASIC0□□□□□ -2.41
CHMP1AQ9HD42 MIR610-201ENST00000385139 96 ntBASIC0□□□□□ -2.41
CHMP1AQ9HD42 MIR577-201ENST00000385196 96 ntBASIC0□□□□□ -2.41
CHMP1AQ9HD42 SNORD110-201ENST00000408189 75 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 239.9 ms