Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TRAJ51-201ENST00000504127 63 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 RNU6-781P-201ENST00000516377 101 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 RNU7-6P-201ENST00000516845 62 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 RNU6-255P-201ENST00000516957 105 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 MIR4802-201ENST00000581881 80 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 Y_RNA.773-201ENST00000607168 90 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 AL162376.1-201ENST00000624117 175 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 RNU6-571P-201ENST00000384128 107 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 MIR34C-201ENST00000384831 77 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 RNA5SP299-201ENST00000391203 116 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 MTND4LP9-201ENST00000427694 174 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 AC073261.1-201ENST00000429409 121 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 MIR4500-201ENST00000579472 76 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
LIME1Q9H400 RNU6-170P-201ENST00000362832 104 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 SNORA42.1-201ENST00000363515 137 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 Y_RNA.360-201ENST00000365512 102 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 RNU6-187P-201ENST00000384139 106 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 Y_RNA.568-201ENST00000384742 113 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 MIR635-201ENST00000384830 98 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 MIR548D2-201ENST00000384955 97 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 SNORD41.1-201ENST00000391000 69 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 MIR548I1-201ENST00000408810 149 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 RNA5SP272-201ENST00000516095 111 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 RNU6-1234P-201ENST00000516877 103 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 MIR1255B1-201ENST00000636325 63 ntBASIC0.16□□□□□ -2.38
LIME1Q9H400 Y_RNA.49-201ENST00000362714 112 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 SNORD58C-201ENST00000365223 64 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 MIR599-201ENST00000385069 95 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 MIR1263-201ENST00000408324 86 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 MIR1912-201ENST00000410389 80 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 BX276092.1-201ENST00000427368 251 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 RNU6-521P-201ENST00000516663 105 ntBASIC0.15□□□□□ -2.39
LIME1Q9H400 Y_RNA.528-201ENST00000384575 108 ntBASIC0.14□□□□□ -2.39
LIME1Q9H400 RNU7-104P-201ENST00000459398 79 ntBASIC0.14□□□□□ -2.39
LIME1Q9H400 RNU6-1006P-201ENST00000516998 103 ntBASIC0.14□□□□□ -2.39
LIME1Q9H400 SNORA40-201ENST00000388090 126 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 MIR759-201ENST00000390224 91 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 MIR1265-201ENST00000408444 86 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 RNU6-257P-201ENST00000410238 98 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 SNORD63B-201ENST00000411005 70 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 AL353813.1-201ENST00000440700 253 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 MIR5589-201ENST00000579442 60 ntBASIC0.13□□□□□ -2.39
LIME1Q9H400 SNORA9.1-201ENST00000362412 131 ntBASIC0.12□□□□□ -2.39
LIME1Q9H400 RNU6-1313P-201ENST00000362622 102 ntBASIC0.12□□□□□ -2.39
LIME1Q9H400 RNU6-235P-201ENST00000362644 107 ntBASIC0.12□□□□□ -2.39
LIME1Q9H400 RNU6-1260P-201ENST00000362944 107 ntBASIC0.12□□□□□ -2.39
LIME1Q9H400 Y_RNA.343-201ENST00000365354 112 ntBASIC0.12□□□□□ -2.39
LIME1Q9H400 RNU6-1265P-201ENST00000516342 103 ntBASIC0.12□□□□□ -2.39
LIME1Q9H400 RNU6-363P-201ENST00000362895 105 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 Y_RNA.344-201ENST00000365381 112 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 Y_RNA.362-201ENST00000365518 110 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 Y_RNA.423-201ENST00000384057 113 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 RNU6-907P-201ENST00000390924 102 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 RNU6-772P-201ENST00000516042 105 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 RNU6-850P-201ENST00000516934 103 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 MIR3668-201ENST00000582138 75 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 AC025166.1-201ENST00000612411 163 ntBASIC0.11□□□□□ -2.39
LIME1Q9H400 Y_RNA.35-201ENST00000362601 101 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 RNA5SP128-201ENST00000365305 116 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 SNORD38.2-201ENST00000384470 69 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 MIR760-201ENST00000390220 80 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 RNU7-195P-201ENST00000458793 62 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 Y_RNA.809-201ENST00000516058 95 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 MIR4752-201ENST00000579672 72 ntBASIC0.1□□□□□ -2.39
LIME1Q9H400 MTND5P18-201ENST00000445624 1801 ntBASIC0.09□□□□□ -2.39
LIME1Q9H400 RNY4P6-201ENST00000363667 96 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 Y_RNA.221-201ENST00000364248 96 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 Y_RNA.323-201ENST00000365157 109 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 Y_RNA.342-201ENST00000365352 113 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 SNORA2A-201ENST00000383885 135 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 RNU6-209P-201ENST00000384118 107 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 RNU6-346P-201ENST00000516288 111 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 RNU6-1018P-201ENST00000516577 106 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 MIR5706-201ENST00000579841 80 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 AC073869.9-201ENST00000641610 120 ntBASIC0.09□□□□□ -2.4
LIME1Q9H400 MIR539-201ENST00000365690 78 ntBASIC0.08□□□□□ -2.4
LIME1Q9H400 RNU6-127P-201ENST00000390897 107 ntBASIC0.08□□□□□ -2.4
LIME1Q9H400 Y_RNA.586-201ENST00000391146 98 ntBASIC0.08□□□□□ -2.4
LIME1Q9H400 MIR548L-201ENST00000408303 86 ntBASIC0.08□□□□□ -2.4
LIME1Q9H400 RNU6-1061P-201ENST00000516530 99 ntBASIC0.08□□□□□ -2.4
LIME1Q9H400 RNU6-269P-201ENST00000391077 97 ntBASIC0.07□□□□□ -2.4
LIME1Q9H400 SNORA7.5-201ENST00000410672 110 ntBASIC0.07□□□□□ -2.4
LIME1Q9H400 RNU7-106P-201ENST00000459514 67 ntBASIC0.07□□□□□ -2.4
LIME1Q9H400 MIR3920-201ENST00000581751 86 ntBASIC0.07□□□□□ -2.4
LIME1Q9H400 uc_338.28-201ENST00000612082 187 ntBASIC0.07□□□□□ -2.4
LIME1Q9H400 SNORA70.25-201ENST00000612741 95 ntBASIC0.07□□□□□ -2.4
LIME1Q9H400 SNORD38.1-201ENST00000363863 68 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 Y_RNA.346-201ENST00000365385 112 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 SNORD50.2-201ENST00000365465 70 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 RNU6-1201P-201ENST00000384227 107 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 Y_RNA.549-201ENST00000384657 102 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 MIR501-201ENST00000390204 84 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 Y_RNA.630-201ENST00000411370 108 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 RPL39P34-201ENST00000477141 156 ntBASIC0.06□□□□□ -2.4
LIME1Q9H400 Y_RNA.712-201ENST00000517011 92 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 276.2 ms