Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-1313P-201ENST00000362622 102 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 RNA5SP245-201ENST00000364239 121 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 Y_RNA.353-201ENST00000365440 108 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 SNORD116-21-201ENST00000384507 92 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 SNORD71-201ENST00000411292 86 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 AC092628.1-201ENST00000436250 252 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 RNU6-313P-201ENST00000516317 112 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 RNU4-54P-201ENST00000516428 129 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 AC010487.4-201ENST00000637027 61 ntBASIC0.7□□□□□ -2.3
NUP88Q99567 Y_RNA.49-201ENST00000362714 112 ntBASIC0.69□□□□□ -2.3
NUP88Q99567 SNORD18A-201ENST00000363753 72 ntBASIC0.69□□□□□ -2.3
NUP88Q99567 RNU6-880P-201ENST00000384526 107 ntBASIC0.69□□□□□ -2.3
NUP88Q99567 MIR548I2-201ENST00000408348 149 ntBASIC0.69□□□□□ -2.3
NUP88Q99567 RNA5SP193-201ENST00000410353 107 ntBASIC0.69□□□□□ -2.3
NUP88Q99567 AC018659.1-201ENST00000551083 169 ntBASIC0.69□□□□□ -2.3
NUP88Q99567 AL606753.1-201ENST00000427435 87 ntBASIC0.68□□□□□ -2.3
NUP88Q99567 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.68□□□□□ -2.3
NUP88Q99567 RNU6-1018P-201ENST00000516577 106 ntBASIC0.68□□□□□ -2.3
NUP88Q99567 MIR924-201ENST00000638017 53 ntBASIC0.68□□□□□ -2.3
NUP88Q99567 SNORD115-24-201ENST00000363528 82 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 SNORD38.1-201ENST00000363863 68 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 RNU6-571P-201ENST00000384128 107 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 RNU6-1168P-201ENST00000390831 104 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 RNU6-412P-201ENST00000516434 106 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 AC068339.1-201ENST00000526965 141 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 AC096720.1-201ENST00000604441 183 ntBASIC0.67□□□□□ -2.3
NUP88Q99567 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.67□□□□□ -2.3
NUP88Q99567 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
NUP88Q99567 RNU6-170P-201ENST00000362832 104 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 RNA5SP517-201ENST00000364724 117 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 Y_RNA.563-201ENST00000384707 108 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 MIR92A1-201ENST00000385233 78 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 TRAJ51-201ENST00000504127 63 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 RNU6-229P-201ENST00000516614 102 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 RNU6-850P-201ENST00000516934 103 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 MIR4639-201ENST00000584938 69 ntBASIC0.66□□□□□ -2.3
NUP88Q99567 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
NUP88Q99567 RNA5SP347-201ENST00000362445 119 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 RNU6-476P-201ENST00000384726 107 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 MIR548L-201ENST00000408303 86 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 RNU6-1064P-201ENST00000410626 104 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 SNRPGP12-201ENST00000449481 213 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 RNA5SP227-201ENST00000516184 113 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 RNU6-479P-201ENST00000516348 105 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 MIR4711-201ENST00000578274 70 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 RNU6-90P-201ENST00000606352 106 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 AL442128.1-201ENST00000615151 90 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 AC244669.1-204ENST00000621564 178 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 AC243829.3-201ENST00000622177 108 ntBASIC0.65□□□□□ -2.31
NUP88Q99567 Y_RNA.115-201ENST00000363272 98 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 RNU6-1201P-201ENST00000384227 107 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 SNORD28-201ENST00000384706 75 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 MIR599-201ENST00000385069 95 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 MIR548G-201ENST00000408442 89 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 SNORD63B-201ENST00000411005 70 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.64□□□□□ -2.31
NUP88Q99567 AL353813.1-201ENST00000440700 253 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 SNORA25.18-201ENST00000607153 114 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.64□□□□□ -2.31
NUP88Q99567 Y_RNA.35-201ENST00000362601 101 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 RNA5SP205-201ENST00000364653 136 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 U8.6-201ENST00000364939 135 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 RNU6-1056P-201ENST00000383996 107 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 SNORA8.2-201ENST00000384372 139 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 RNU2-51P-201ENST00000410708 197 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 SNORA40.8-201ENST00000411034 126 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 RNA5SP268-201ENST00000516828 124 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 SCARNA16.5-201ENST00000517114 183 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 MIR5009-201ENST00000578736 100 ntBASIC0.63□□□□□ -2.31
NUP88Q99567 Y_RNA.247-201ENST00000364500 92 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 Y_RNA.342-201ENST00000365352 113 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 RNU6-1144P-201ENST00000384247 104 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 AC097635.1-201ENST00000450678 155 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 AC244505.6-201ENST00000452829 130 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 Y_RNA.659-201ENST00000515994 113 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 RN7SKP12-201ENST00000516275 143 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.62□□□□□ -2.31
NUP88Q99567 Y_RNA.221-201ENST00000364248 96 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 Y_RNA.258-201ENST00000364613 105 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 SNORA19-201ENST00000384737 128 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 RNU7-195P-201ENST00000458793 62 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 RNU7-104P-201ENST00000459398 79 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 Y_RNA.809-201ENST00000516058 95 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 RNU6-1006P-201ENST00000516998 103 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 RNA5SP330-201ENST00000517096 96 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 MIR4694-201ENST00000578534 80 ntBASIC0.61□□□□□ -2.31
NUP88Q99567 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.61□□□□□ -2.31
NUP88Q99567 Y_RNA.57-201ENST00000362806 113 ntBASIC0.6□□□□□ -2.31
NUP88Q99567 MIR577-201ENST00000385196 96 ntBASIC0.6□□□□□ -2.31
NUP88Q99567 RNA5SP47-201ENST00000517230 109 ntBASIC0.6□□□□□ -2.31
NUP88Q99567 MIR6129-201ENST00000616087 109 ntBASIC0.6□□□□□ -2.31
NUP88Q99567 AC091304.10-201ENST00000641554 121 ntBASIC0.6□□□□□ -2.31
NUP88Q99567 SNORA36.1-201ENST00000363424 132 ntBASIC0.59□□□□□ -2.31
NUP88Q99567 Y_RNA.281-201ENST00000364774 94 ntBASIC0.59□□□□□ -2.31
NUP88Q99567 RNU6-716P-201ENST00000365621 103 ntBASIC0.59□□□□□ -2.31
NUP88Q99567 MIR518A1-201ENST00000385068 85 ntBASIC0.59□□□□□ -2.31
NUP88Q99567 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.59□□□□□ -2.31
NUP88Q99567 AC141557.1-201ENST00000540982 400 ntBASIC0.59□□□□□ -2.31
NUP88Q99567 MIR8087-201ENST00000612745 78 ntBASIC0.59□□□□□ -2.31
NUP88Q99567 RNY3P2-201ENST00000362918 102 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 228.6 ms