Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC093423.1-201ENST00000440817 142 ntBASIC-0.54□□□□□ -2.5
CCDC40Q4G0X9 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.54□□□□□ -2.5
CCDC40Q4G0X9 RN7SL660P-201ENST00000614852 299 ntBASIC-0.54□□□□□ -2.5
CCDC40Q4G0X9 SNORD14C-201ENST00000365382 88 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 SNORD38.2-201ENST00000384470 69 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 MIR181B2-201ENST00000385004 89 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 MIR519E-201ENST00000385075 84 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 SNORD37.2-201ENST00000391075 66 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 AP001180.6-201ENST00000584918 159 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 MIR6507-201ENST00000613630 70 ntBASIC-0.55□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.133-201ENST00000363428 110 ntBASIC-0.56□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.56□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.56□□□□□ -2.5
CCDC40Q4G0X9 MIR5589-201ENST00000579442 60 ntBASIC-0.56□□□□□ -2.5
CCDC40Q4G0X9 MIR548AG2-201ENST00000581228 64 ntBASIC-0.56□□□□□ -2.5
CCDC40Q4G0X9 AC087741.2-201ENST00000619415 172 ntBASIC-0.56□□□□□ -2.5
CCDC40Q4G0X9 MIR655-201ENST00000362159 97 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 RNY1P11-201ENST00000363759 113 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 RNU6-811P-201ENST00000384069 107 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 MIR34C-201ENST00000384831 77 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 MIR568-201ENST00000385036 95 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 YWHAEP2-201ENST00000580066 112 ntBASIC-0.57□□□□□ -2.5
CCDC40Q4G0X9 SNORD115-19-201ENST00000363098 82 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 SNORD115-18-201ENST00000363293 82 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 SNORD115-17-201ENST00000364612 82 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 U8.6-201ENST00000364939 135 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 MIR516A2-201ENST00000384888 90 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 MIR516A1-201ENST00000385033 90 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 AC244250.2-201ENST00000418731 148 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 RNU7-6P-201ENST00000516845 62 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 MIR4473-201ENST00000583731 91 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 MIR4788-201ENST00000639104 80 ntBASIC-0.58□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 RNA5SP205-201ENST00000364653 136 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 SNORD114-29-201ENST00000364819 70 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 SNORA32.3-201ENST00000384772 121 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 MIR1912-201ENST00000410389 80 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 SNORD126-201ENST00000459475 77 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 RNU7-188P-201ENST00000517063 64 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 MIR4460-201ENST00000577862 86 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 MIR4636-201ENST00000582271 80 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 AC108081.1-201ENST00000604358 221 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 U4.1-201ENST00000620349 87 ntBASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.59□□□□□ -2.5
CCDC40Q4G0X9 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.6□□□□□ -2.51
CCDC40Q4G0X9 MIR196A2-201ENST00000385189 110 ntBASIC-0.6□□□□□ -2.51
CCDC40Q4G0X9 RNU6-521P-201ENST00000516663 105 ntBASIC-0.6□□□□□ -2.51
CCDC40Q4G0X9 AC072026.1-201ENST00000605023 201 ntBASIC-0.6□□□□□ -2.51
CCDC40Q4G0X9 MIR548AZ-201ENST00000616567 95 ntBASIC-0.6□□□□□ -2.51
CCDC40Q4G0X9 MIR3658-201ENST00000636291 56 ntBASIC-0.6□□□□□ -2.51
CCDC40Q4G0X9 RNA5SP98-201ENST00000363158 137 ntBASIC-0.61□□□□□ -2.51
CCDC40Q4G0X9 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.61□□□□□ -2.51
CCDC40Q4G0X9 MIR2113-201ENST00000459007 91 ntBASIC-0.61□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.61□□□□□ -2.51
CCDC40Q4G0X9 MIR3163-201ENST00000581592 73 ntBASIC-0.61□□□□□ -2.51
CCDC40Q4G0X9 MIR4493-201ENST00000584016 73 ntBASIC-0.61□□□□□ -2.51
CCDC40Q4G0X9 MIR101-1-201ENST00000362265 75 ntBASIC-0.62□□□□□ -2.51
CCDC40Q4G0X9 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.62□□□□□ -2.51
CCDC40Q4G0X9 RNU6-287P-201ENST00000516230 98 ntBASIC-0.62□□□□□ -2.51
CCDC40Q4G0X9 uc_338.36-201ENST00000622331 158 ntBASIC-0.62□□□□□ -2.51
CCDC40Q4G0X9 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.63□□□□□ -2.51
CCDC40Q4G0X9 AC022559.1-201ENST00000520905 205 ntBASIC-0.63□□□□□ -2.51
CCDC40Q4G0X9 AC130289.1-201ENST00000577321 73 ntBASIC-0.63□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.63□□□□□ -2.51
CCDC40Q4G0X9 AL590491.3-201ENST00000610731 82 ntBASIC-0.63□□□□□ -2.51
CCDC40Q4G0X9 MT-TY-201ENST00000387409 66 ntBASIC-0.64□□□□□ -2.51
CCDC40Q4G0X9 MIR759-201ENST00000390224 91 ntBASIC-0.64□□□□□ -2.51
CCDC40Q4G0X9 RNU6-243P-201ENST00000391140 107 ntBASIC-0.64□□□□□ -2.51
CCDC40Q4G0X9 MIR3121-201ENST00000579680 77 ntBASIC-0.64□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.193-201ENST00000363979 102 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 RPS29P8-201ENST00000445109 171 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 RNU6-327P-201ENST00000516270 127 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 FTX_2.1-201ENST00000618816 94 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 TRDV1-202ENST00000621643 102 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 AC021753.1-201ENST00000635724 168 ntBASIC-0.65□□□□□ -2.51
CCDC40Q4G0X9 SNORD36A-201ENST00000362874 73 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.307-201ENST00000365022 117 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 SNORA51.5-201ENST00000384126 131 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 RNU6-1011P-201ENST00000384668 107 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 MT-TI-201ENST00000387365 69 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 AL118496.2-201ENST00000448300 230 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 RNU6-175P-201ENST00000516896 107 ntBASIC-0.66□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.67□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 248.7 ms