Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC090617.10-201ENST00000624308 134 ntBASIC-1.17□□□□□ -2.6
CHD9Q3L8U1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-1.17□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU6-1213P-201ENST00000517075 94 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 SNORD42B-201ENST00000458893 67 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU7-106P-201ENST00000459514 67 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU6-264P-201ENST00000517134 104 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU6-54P-201ENST00000365563 107 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU6-908P-201ENST00000410160 94 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 RNU6-130P-201ENST00000411112 103 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 MIR4536-1-201ENST00000583537 88 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 AC073114.1-201ENST00000612027 490 ntBASIC-1.18□□□□□ -2.6
CHD9Q3L8U1 MIR487B-201ENST00000385021 84 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 MIR451A-201ENST00000385059 72 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 MIR526A2-201ENST00000390198 65 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.605-201ENST00000410577 105 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 RNU7-4P-201ENST00000516961 62 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 RNU6-699P-201ENST00000517081 110 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 AC068339.1-201ENST00000526965 141 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.772-201ENST00000606692 102 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 RNU4-10P-201ENST00000364383 140 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 RNU6-524P-201ENST00000384270 107 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.553-201ENST00000384670 102 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 MIR519A2-201ENST00000384990 87 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 RNA5SP236-201ENST00000516169 116 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 SCARNA15-202ENST00000516881 127 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 MIR4748-201ENST00000578076 82 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 AP000720.1-201ENST00000625091 483 ntBASIC-1.19□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 RNU6-780P-201ENST00000391030 104 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.646-201ENST00000410980 101 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 AL353691.2-201ENST00000443795 59 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 MIR376A1-201ENST00000616574 68 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 AL138825.1-201ENST00000618587 192 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 RNU6-495P-201ENST00000362995 107 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 RNU6-1188P-201ENST00000363795 107 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 SNORD75.2-201ENST00000408784 58 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 MTND1P1-201ENST00000445453 368 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 AL365265.1-201ENST00000621045 234 ntBASIC-1.2□□□□□ -2.6
CHD9Q3L8U1 RNY4P9-201ENST00000363194 97 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 SNORD27-201ENST00000363981 72 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.813-201ENST00000364639 102 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 RNU6-21P-201ENST00000384710 107 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 RNU6-120P-201ENST00000516077 103 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 MIR376B-201ENST00000614515 100 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.520-201ENST00000384556 102 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 RNU6-935P-201ENST00000410371 100 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 U8.20-201ENST00000459445 131 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 AL512310.12-203ENST00000640543 90 ntBASIC-1.21□□□□□ -2.6
CHD9Q3L8U1 RNU6-451P-201ENST00000362921 107 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 RNU6-647P-201ENST00000364243 107 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 MIR181A1-201ENST00000385026 110 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 RNA5SP147-201ENST00000516493 109 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 RNU6-762P-201ENST00000517107 102 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 RNU6-90P-201ENST00000606352 106 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 MTND5P26-201ENST00000426018 1752 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.542-201ENST00000384641 111 ntBASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-1.22□□□□□ -2.6
CHD9Q3L8U1 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.22□□□□□ -2.61
CHD9Q3L8U1 FGF7P4-201ENST00000509595 295 ntBASIC-1.22□□□□□ -2.61
CHD9Q3L8U1 MIR4464-201ENST00000580818 92 ntBASIC-1.22□□□□□ -2.61
CHD9Q3L8U1 DEFB117-201ENST00000602356 141 ntBASIC-1.22□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU4-17P-201ENST00000365598 141 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU6-102P-201ENST00000384485 104 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU2-51P-201ENST00000410708 197 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU6-1299P-201ENST00000516316 100 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 AL359880.1-201ENST00000621879 266 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU6-924P-201ENST00000362926 108 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 MTND3P10-201ENST00000450967 341 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU6-314P-201ENST00000516574 104 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 MIR5693-201ENST00000577722 73 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 MIR5688-201ENST00000580619 83 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 snoU18.1-201ENST00000629629 71 ntBASIC-1.23□□□□□ -2.61
CHD9Q3L8U1 RNU6-1272P-201ENST00000362776 107 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 AL078595.1-201ENST00000404458 226 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 AC018880.2-201ENST00000414265 201 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 RNU6-764P-201ENST00000516396 105 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 TRDV1-202ENST00000621643 102 ntBASIC-1.24□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 230.8 ms