Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR3668-201ENST00000582138 75 ntBASIC0.37□□□□□ -2.35
CTCFP49711 MIR4493-201ENST00000584016 73 ntBASIC0.37□□□□□ -2.35
CTCFP49711 AC244669.1-204ENST00000621564 178 ntBASIC0.37□□□□□ -2.35
CTCFP49711 Y_RNA.213-201ENST00000364178 111 ntBASIC0.36□□□□□ -2.35
CTCFP49711 RNU6-863P-201ENST00000515989 104 ntBASIC0.36□□□□□ -2.35
CTCFP49711 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
CTCFP49711 MIR4500-201ENST00000579472 76 ntBASIC0.36□□□□□ -2.35
CTCFP49711 MIR548H5-201ENST00000580314 60 ntBASIC0.36□□□□□ -2.35
CTCFP49711 Y_RNA.773-201ENST00000607168 90 ntBASIC0.36□□□□□ -2.35
CTCFP49711 MIR376B-201ENST00000614515 100 ntBASIC0.36□□□□□ -2.35
CTCFP49711 RNU6-865P-201ENST00000364772 107 ntBASIC0.35□□□□□ -2.35
CTCFP49711 Y_RNA.457-201ENST00000384237 111 ntBASIC0.35□□□□□ -2.35
CTCFP49711 Y_RNA.568-201ENST00000384742 113 ntBASIC0.35□□□□□ -2.35
CTCFP49711 MIR548I1-201ENST00000408810 149 ntBASIC0.35□□□□□ -2.35
CTCFP49711 RNU6-735P-201ENST00000410612 107 ntBASIC0.35□□□□□ -2.35
CTCFP49711 RNU6-346P-201ENST00000516288 111 ntBASIC0.35□□□□□ -2.35
CTCFP49711 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.35□□□□□ -2.35
CTCFP49711 TUG1_4.1-201ENST00000619464 181 ntBASIC0.35□□□□□ -2.35
CTCFP49711 AC091304.10-201ENST00000641554 121 ntBASIC0.35□□□□□ -2.35
CTCFP49711 MIR604-201ENST00000384880 94 ntBASIC0.34□□□□□ -2.36
CTCFP49711 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
CTCFP49711 RNA5SP227-201ENST00000516184 113 ntBASIC0.34□□□□□ -2.36
CTCFP49711 AC138869.1-201ENST00000568623 124 ntBASIC0.34□□□□□ -2.36
CTCFP49711 AC108676.2-201ENST00000605225 163 ntBASIC0.34□□□□□ -2.36
CTCFP49711 RNU6-235P-201ENST00000362644 107 ntBASIC0.33□□□□□ -2.36
CTCFP49711 Y_RNA.528-201ENST00000384575 108 ntBASIC0.33□□□□□ -2.36
CTCFP49711 RNU6-257P-201ENST00000410238 98 ntBASIC0.33□□□□□ -2.36
CTCFP49711 RNU6-1234P-201ENST00000516877 103 ntBASIC0.33□□□□□ -2.36
CTCFP49711 SNORD115-24-201ENST00000363528 82 ntBASIC0.32□□□□□ -2.36
CTCFP49711 Y_RNA.343-201ENST00000365354 112 ntBASIC0.32□□□□□ -2.36
CTCFP49711 MIR34C-201ENST00000384831 77 ntBASIC0.32□□□□□ -2.36
CTCFP49711 SNORA40-201ENST00000388090 126 ntBASIC0.32□□□□□ -2.36
CTCFP49711 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.32□□□□□ -2.36
CTCFP49711 RNU2-59P-201ENST00000410482 191 ntBASIC0.32□□□□□ -2.36
CTCFP49711 AC069271.1-201ENST00000445577 156 ntBASIC0.32□□□□□ -2.36
CTCFP49711 RNU7-10P-201ENST00000607194 63 ntBASIC0.32□□□□□ -2.36
CTCFP49711 MIR1255B1-201ENST00000636325 63 ntBASIC0.32□□□□□ -2.36
CTCFP49711 Y_RNA.49-201ENST00000362714 112 ntBASIC0.31□□□□□ -2.36
CTCFP49711 SNORD114-31-201ENST00000363219 75 ntBASIC0.31□□□□□ -2.36
CTCFP49711 SNORD58C-201ENST00000365223 64 ntBASIC0.31□□□□□ -2.36
CTCFP49711 RNU6-209P-201ENST00000384118 107 ntBASIC0.31□□□□□ -2.36
CTCFP49711 MIR759-201ENST00000390224 91 ntBASIC0.31□□□□□ -2.36
CTCFP49711 BX276092.1-201ENST00000427368 251 ntBASIC0.31□□□□□ -2.36
CTCFP49711 AC104692.1-201ENST00000472406 90 ntBASIC0.31□□□□□ -2.36
CTCFP49711 TRAJ51-201ENST00000504127 63 ntBASIC0.31□□□□□ -2.36
CTCFP49711 RNU6-521P-201ENST00000516663 105 ntBASIC0.31□□□□□ -2.36
CTCFP49711 AP001180.6-201ENST00000584918 159 ntBASIC0.31□□□□□ -2.36
CTCFP49711 RNU6-1126P-201ENST00000384002 107 ntBASIC0.3□□□□□ -2.36
CTCFP49711 MIR635-201ENST00000384830 98 ntBASIC0.3□□□□□ -2.36
CTCFP49711 MIR548D2-201ENST00000384955 97 ntBASIC0.3□□□□□ -2.36
CTCFP49711 MIR548I2-201ENST00000408348 149 ntBASIC0.3□□□□□ -2.36
CTCFP49711 MIR1468-201ENST00000410600 86 ntBASIC0.3□□□□□ -2.36
CTCFP49711 snoU13.11-201ENST00000459219 104 ntBASIC0.3□□□□□ -2.36
CTCFP49711 RNU7-161P-201ENST00000517289 62 ntBASIC0.3□□□□□ -2.36
CTCFP49711 Y_RNA.360-201ENST00000365512 102 ntBASIC0.29□□□□□ -2.36
CTCFP49711 RNU6-1099P-201ENST00000363533 107 ntBASIC0.28□□□□□ -2.36
CTCFP49711 RNA5SP403-201ENST00000363598 108 ntBASIC0.28□□□□□ -2.36
CTCFP49711 SNORD95.1-201ENST00000364099 68 ntBASIC0.28□□□□□ -2.36
CTCFP49711 RNU6-1061P-201ENST00000516530 99 ntBASIC0.28□□□□□ -2.36
CTCFP49711 AC025166.1-201ENST00000612411 163 ntBASIC0.28□□□□□ -2.36
CTCFP49711 MIR6755-201ENST00000619993 66 ntBASIC0.28□□□□□ -2.36
CTCFP49711 RNU6-726P-201ENST00000364680 107 ntBASIC0.27□□□□□ -2.37
CTCFP49711 RNU6-187P-201ENST00000384139 106 ntBASIC0.27□□□□□ -2.37
CTCFP49711 MIR519A1-201ENST00000385257 85 ntBASIC0.27□□□□□ -2.37
CTCFP49711 Y_RNA.610-201ENST00000410681 103 ntBASIC0.27□□□□□ -2.37
CTCFP49711 AC097635.1-201ENST00000450678 155 ntBASIC0.27□□□□□ -2.37
CTCFP49711 MIR4768-201ENST00000585270 74 ntBASIC0.27□□□□□ -2.37
CTCFP49711 MTND5P18-201ENST00000445624 1801 ntBASIC0.27□□□□□ -2.37
CTCFP49711 RNU6-815P-201ENST00000384080 113 ntBASIC0.26□□□□□ -2.37
CTCFP49711 RNU6-571P-201ENST00000384128 107 ntBASIC0.26□□□□□ -2.37
CTCFP49711 MIR599-201ENST00000385069 95 ntBASIC0.26□□□□□ -2.37
CTCFP49711 RNU6-772P-201ENST00000516042 105 ntBASIC0.26□□□□□ -2.37
CTCFP49711 RNU6-170P-201ENST00000362832 104 ntBASIC0.25□□□□□ -2.37
CTCFP49711 Y_RNA.344-201ENST00000365381 112 ntBASIC0.25□□□□□ -2.37
CTCFP49711 Y_RNA.586-201ENST00000391146 98 ntBASIC0.25□□□□□ -2.37
CTCFP49711 SNORD63B-201ENST00000411005 70 ntBASIC0.25□□□□□ -2.37
CTCFP49711 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
CTCFP49711 RNU7-104P-201ENST00000459398 79 ntBASIC0.25□□□□□ -2.37
CTCFP49711 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
CTCFP49711 MT-TR-201ENST00000387439 65 ntBASIC0.24□□□□□ -2.37
CTCFP49711 Y_RNA.630-201ENST00000411370 108 ntBASIC0.24□□□□□ -2.37
CTCFP49711 AL353813.1-201ENST00000440700 253 ntBASIC0.24□□□□□ -2.37
CTCFP49711 AC069113.3-201ENST00000521019 150 ntBASIC0.24□□□□□ -2.37
CTCFP49711 RNU6-363P-201ENST00000362895 105 ntBASIC0.23□□□□□ -2.37
CTCFP49711 RNY4P6-201ENST00000363667 96 ntBASIC0.23□□□□□ -2.37
CTCFP49711 Y_RNA.221-201ENST00000364248 96 ntBASIC0.23□□□□□ -2.37
CTCFP49711 MIR539-201ENST00000365690 78 ntBASIC0.23□□□□□ -2.37
CTCFP49711 SNORA7.5-201ENST00000410672 110 ntBASIC0.23□□□□□ -2.37
CTCFP49711 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.23□□□□□ -2.37
CTCFP49711 RNU6-1211P-201ENST00000459179 105 ntBASIC0.23□□□□□ -2.37
CTCFP49711 RNU6-971P-201ENST00000516920 106 ntBASIC0.23□□□□□ -2.37
CTCFP49711 RNU6-850P-201ENST00000516934 103 ntBASIC0.23□□□□□ -2.37
CTCFP49711 RNU6-1006P-201ENST00000516998 103 ntBASIC0.23□□□□□ -2.37
CTCFP49711 MIR4752-201ENST00000579672 72 ntBASIC0.23□□□□□ -2.37
CTCFP49711 RNU1-29P-201ENST00000606574 126 ntBASIC0.23□□□□□ -2.37
CTCFP49711 AL162376.1-201ENST00000624117 175 ntBASIC0.23□□□□□ -2.37
CTCFP49711 MIR371B-201ENST00000638082 66 ntBASIC0.23□□□□□ -2.37
CTCFP49711 RNU6-1313P-201ENST00000362622 102 ntBASIC0.22□□□□□ -2.37
CTCFP49711 Y_RNA.423-201ENST00000384057 113 ntBASIC0.22□□□□□ -2.37
CTCFP49711 RNU7-195P-201ENST00000458793 62 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 289.8 ms