Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP117-201ENST00000365294 118 ntBASIC2.57□□□□□ -2
COL9A1P20849 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.57□□□□□ -2
COL9A1P20849 SUMO1P4-201ENST00000429430 302 ntBASIC2.57□□□□□ -2
COL9A1P20849 AL691482.2-201ENST00000457453 84 ntBASIC2.57□□□□□ -2
COL9A1P20849 IGLVVI-22-1-201ENST00000521183 211 ntBASIC2.57□□□□□ -2
COL9A1P20849 MIR6504-201ENST00000613520 61 ntBASIC2.57□□□□□ -2
COL9A1P20849 RNU6-934P-201ENST00000365154 107 ntBASIC2.56□□□□□ -2
COL9A1P20849 SNORA6-201ENST00000384033 151 ntBASIC2.56□□□□□ -2
COL9A1P20849 RNU6-1184P-201ENST00000384588 108 ntBASIC2.56□□□□□ -2
COL9A1P20849 MIR216B-201ENST00000390186 82 ntBASIC2.56□□□□□ -2
COL9A1P20849 RN7SKP123-201ENST00000410732 291 ntBASIC2.56□□□□□ -2
COL9A1P20849 RNA5SP385-201ENST00000515947 110 ntBASIC2.56□□□□□ -2
COL9A1P20849 RNU6-542P-201ENST00000516405 103 ntBASIC2.56□□□□□ -2
COL9A1P20849 SNORA31.11-201ENST00000516528 139 ntBASIC2.56□□□□□ -2
COL9A1P20849 AC103810.8-201ENST00000607347 118 ntBASIC2.56□□□□□ -2
COL9A1P20849 AC245884.12-201ENST00000615364 59 ntBASIC2.56□□□□□ -2
COL9A1P20849 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.56□□□□□ -2
COL9A1P20849 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL9A1P20849 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL9A1P20849 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL9A1P20849 Y_RNA.258-201ENST00000364613 105 ntBASIC2.55□□□□□ -2
COL9A1P20849 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.55□□□□□ -2
COL9A1P20849 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.55□□□□□ -2
COL9A1P20849 MIR1276-201ENST00000408707 83 ntBASIC2.55□□□□□ -2
COL9A1P20849 SNORD83.1-201ENST00000411362 77 ntBASIC2.55□□□□□ -2
COL9A1P20849 RNU7-24P-201ENST00000458867 62 ntBASIC2.55□□□□□ -2
COL9A1P20849 RNU6-287P-201ENST00000516230 98 ntBASIC2.55□□□□□ -2
COL9A1P20849 MIR3664-201ENST00000579074 99 ntBASIC2.55□□□□□ -2
COL9A1P20849 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL9A1P20849 MIR8074-201ENST00000615081 81 ntBASIC2.55□□□□□ -2
COL9A1P20849 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL9A1P20849 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
COL9A1P20849 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
COL9A1P20849 RNU6-668P-201ENST00000364180 107 ntBASIC2.54□□□□□ -2
COL9A1P20849 SNORD113.3-201ENST00000364630 78 ntBASIC2.54□□□□□ -2
COL9A1P20849 SNORA67.3-201ENST00000384366 140 ntBASIC2.54□□□□□ -2
COL9A1P20849 SNORD75.2-201ENST00000408784 58 ntBASIC2.54□□□□□ -2
COL9A1P20849 AC244505.6-201ENST00000452829 130 ntBASIC2.54□□□□□ -2
COL9A1P20849 snoU13.21-201ENST00000459368 105 ntBASIC2.54□□□□□ -2
COL9A1P20849 AC055731.1-201ENST00000474387 401 ntBASIC2.54□□□□□ -2
COL9A1P20849 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.54□□□□□ -2
COL9A1P20849 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL9A1P20849 RNU6-936P-201ENST00000384005 107 ntBASIC2.53□□□□□ -2
COL9A1P20849 RNU6-535P-201ENST00000384722 107 ntBASIC2.53□□□□□ -2
COL9A1P20849 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.53□□□□□ -2
COL9A1P20849 AL645939.4-201ENST00000604495 135 ntBASIC2.53□□□□□ -2
COL9A1P20849 MIR6845-201ENST00000613182 61 ntBASIC2.53□□□□□ -2
COL9A1P20849 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.53□□□□□ -2
COL9A1P20849 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
COL9A1P20849 RNA5SP210-201ENST00000391034 120 ntBASIC2.52□□□□□ -2.01
COL9A1P20849 AC008608.1-201ENST00000603910 127 ntBASIC2.52□□□□□ -2.01
COL9A1P20849 BX248123.2-201ENST00000606318 124 ntBASIC2.52□□□□□ -2.01
COL9A1P20849 AL109933.3-201ENST00000619095 188 ntBASIC2.52□□□□□ -2.01
COL9A1P20849 Y_RNA.30-201ENST00000362572 97 ntBASIC2.51□□□□□ -2.01
COL9A1P20849 RNU6-982P-201ENST00000516216 102 ntBASIC2.51□□□□□ -2.01
COL9A1P20849 MIR3920-201ENST00000581751 86 ntBASIC2.51□□□□□ -2.01
COL9A1P20849 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
COL9A1P20849 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
COL9A1P20849 Y_RNA.375-201ENST00000365625 101 ntBASIC2.5□□□□□ -2.01
COL9A1P20849 MIR4771-2-201ENST00000577758 74 ntBASIC2.5□□□□□ -2.01
COL9A1P20849 MIR4771-1-201ENST00000582617 74 ntBASIC2.5□□□□□ -2.01
COL9A1P20849 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
COL9A1P20849 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.49□□□□□ -2.01
COL9A1P20849 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.49□□□□□ -2.01
COL9A1P20849 RNA5SP276-201ENST00000362580 94 ntBASIC2.49□□□□□ -2.01
COL9A1P20849 AL359511.1-201ENST00000402970 211 ntBASIC2.49□□□□□ -2.01
COL9A1P20849 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
COL9A1P20849 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.49□□□□□ -2.01
COL9A1P20849 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL9A1P20849 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL9A1P20849 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL9A1P20849 SNORD33-201ENST00000362761 85 ntBASIC2.48□□□□□ -2.01
COL9A1P20849 RNA5SP245-201ENST00000364239 121 ntBASIC2.48□□□□□ -2.01
COL9A1P20849 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.48□□□□□ -2.01
COL9A1P20849 AL773524.1-201ENST00000614065 229 ntBASIC2.48□□□□□ -2.01
COL9A1P20849 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.48□□□□□ -2.01
COL9A1P20849 AC073869.9-201ENST00000641610 120 ntBASIC2.48□□□□□ -2.01
COL9A1P20849 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.48□□□□□ -2.01
COL9A1P20849 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.48□□□□□ -2.01
COL9A1P20849 RNU6-940P-201ENST00000363433 104 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 RNU6-1335P-201ENST00000365426 107 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 U8.9-201ENST00000365667 134 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 RNU6-1039P-201ENST00000383931 107 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 RNU6-364P-201ENST00000384387 107 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 SNORD23.1-201ENST00000408212 104 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 AP1B1P2-201ENST00000416196 106 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC2.47□□□□□ -2.01
COL9A1P20849 RNU7-13P-201ENST00000516413 62 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 MIR4713-201ENST00000582691 75 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 MIR4452-201ENST00000583004 71 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 AC092634.7-201ENST00000621022 103 ntBASIC2.47□□□□□ -2.01
COL9A1P20849 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.47□□□□□ -2.01
COL9A1P20849 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.47□□□□□ -2.01
COL9A1P20849 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL9A1P20849 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.01
COL9A1P20849 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL9A1P20849 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
COL9A1P20849 RNU6-1079P-201ENST00000362861 110 ntBASIC2.46□□□□□ -2.02
COL9A1P20849 RNU6-495P-201ENST00000362995 107 ntBASIC2.46□□□□□ -2.02
COL9A1P20849 RNU4-88P-201ENST00000411220 86 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 205.4 ms