Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 SNORD26-201ENST00000384147 75 ntBASIC1.39□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-519P-201ENST00000410590 108 ntBASIC1.39□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU7-56P-201ENST00000458744 62 ntBASIC1.39□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.39□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AC022137.1-201ENST00000483735 151 ntBASIC1.39□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.697-201ENST00000516776 113 ntBASIC1.39□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.191-201ENST00000363972 113 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-573P-201ENST00000383938 106 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-243P-201ENST00000391140 107 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR1827-201ENST00000408549 66 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AC092628.1-201ENST00000436250 252 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AC067940.1-201ENST00000458411 300 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.648-201ENST00000459455 110 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AC008608.1-201ENST00000603910 127 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU7-10P-201ENST00000607194 63 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AL157834.3-201ENST00000615543 103 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AL353770.2-201ENST00000620024 78 ntBASIC1.38□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-633P-201ENST00000362612 103 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-497P-201ENST00000365316 104 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU7-85P-201ENST00000458851 63 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 SNORD4B-201ENST00000459083 72 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 snoU13.11-201ENST00000459219 104 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-448P-201ENST00000517052 107 ntBASIC1.37□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-509P-201ENST00000363519 107 ntBASIC1.36□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR520F-201ENST00000384824 87 ntBASIC1.36□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU7-195P-201ENST00000458793 62 ntBASIC1.36□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.36□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 SNORD115-27-201ENST00000364430 82 ntBASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-535P-201ENST00000384722 107 ntBASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR519A1-201ENST00000385257 85 ntBASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU1-119P-201ENST00000391122 165 ntBASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR5588-201ENST00000581890 63 ntBASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.4-201ENST00000362333 112 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-979P-201ENST00000383896 107 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-291P-201ENST00000384720 107 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR19B1-201ENST00000384829 87 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AP003327.1-201ENST00000529684 127 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RMST_2.1-201ENST00000617263 136 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR548BB-201ENST00000626714 66 ntBASIC1.34□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR150-201ENST00000385048 84 ntBASIC1.33□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.611-201ENST00000410682 108 ntBASIC1.33□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 snoU13.31-201ENST00000607291 104 ntBASIC1.33□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNA5SP245-201ENST00000364239 121 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.283-201ENST00000364798 112 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-242P-201ENST00000384359 107 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.809-201ENST00000516058 95 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AC138907.6-201ENST00000568401 126 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AC138869.1-201ENST00000568623 124 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AL359821.1-201ENST00000605519 182 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR1245B-201ENST00000636115 69 ntBASIC1.32□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-1260P-201ENST00000362944 107 ntBASIC1.31□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-1276P-201ENST00000365372 104 ntBASIC1.31□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 SNORD89-201ENST00000390981 114 ntBASIC1.31□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR4536-1-201ENST00000583537 88 ntBASIC1.31□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-957P-201ENST00000363652 99 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR519C-201ENST00000385053 87 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-466P-201ENST00000391224 103 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 FABP5P4-201ENST00000437203 171 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AC097635.1-201ENST00000450678 155 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 SNORD124-201ENST00000459577 104 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-75P-201ENST00000515944 104 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-65P-201ENST00000516332 98 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-1110P-201ENST00000516462 101 ntBASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.3□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR26B-201ENST00000362251 77 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU4-32P-201ENST00000363404 141 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.426-201ENST00000384068 113 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU6-524P-201ENST00000384270 107 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR520H-201ENST00000385126 88 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR4498-201ENST00000577599 66 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AL136317.1-201ENST00000612653 226 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AC006160.2-201ENST00000637708 154 ntBASIC1.29□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.28□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 MIR599-201ENST00000385069 95 ntBASIC1.28□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 AL606490.4-201ENST00000423117 127 ntBASIC1.28□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 U7.7-201ENST00000459276 60 ntBASIC1.28□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU7-171P-201ENST00000459581 62 ntBASIC1.28□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.28□□□□□ -2.2
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.32-201ENST00000362589 110 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.219-201ENST00000364232 113 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.338-201ENST00000365320 114 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR200A-201ENST00000384875 90 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR942-201ENST00000401111 86 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR1236-201ENST00000408340 102 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNA5SP404-201ENST00000517118 132 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 uc_338.16-201ENST00000621804 95 ntBASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.27□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 SNORD105-201ENST00000386910 85 ntBASIC1.26□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 AC244505.6-201ENST00000452829 130 ntBASIC1.26□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU7-153P-201ENST00000516455 62 ntBASIC1.26□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 SNORA31.14-201ENST00000516728 116 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 174.7 ms