Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MIR1257-201ENST00000408490 117 ntBASIC3.27□□□□□ -1.89
CCDC61Q9Y6R9 SNORD75.2-201ENST00000408784 58 ntBASIC3.27□□□□□ -1.89
CCDC61Q9Y6R9 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC61Q9Y6R9 RNU6-765P-201ENST00000516916 99 ntBASIC3.27□□□□□ -1.89
CCDC61Q9Y6R9 AC073869.9-201ENST00000641610 120 ntBASIC3.27□□□□□ -1.89
CCDC61Q9Y6R9 AC023934.1-201ENST00000574529 2389 ntBASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 RNU7-185P-201ENST00000459215 60 ntBASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 RNU6-56P-201ENST00000516986 93 ntBASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 MIR4524B-201ENST00000581569 115 ntBASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 MIR5007-201ENST00000583098 95 ntBASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 5S_rRNA.15-201ENST00000611169 127 ntBASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC61Q9Y6R9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 RNU6-580P-201ENST00000365159 107 ntBASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 RNA5SP380-201ENST00000517190 98 ntBASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 MIR3938-201ENST00000582157 103 ntBASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 SNRPGP19-201ENST00000603826 189 ntBASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.25□□□□□ -1.89
CCDC61Q9Y6R9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC61Q9Y6R9 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
CCDC61Q9Y6R9 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC61Q9Y6R9 MIR4769-201ENST00000584126 77 ntBASIC3.24□□□□□ -1.89
CCDC61Q9Y6R9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC61Q9Y6R9 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 RNU7-24P-201ENST00000458867 62 ntBASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 GHRLOS.1-201ENST00000610995 70 ntBASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 MIR6509-201ENST00000614603 85 ntBASIC3.23□□□□□ -1.89
CCDC61Q9Y6R9 RNU6-1039P-201ENST00000383931 107 ntBASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 MIR1289-2-201ENST00000408360 111 ntBASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 RNA5SP492-201ENST00000411330 114 ntBASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 RNU6-287P-201ENST00000516230 98 ntBASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 SNORA31.26-201ENST00000517250 137 ntBASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC61Q9Y6R9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 SNORD114-1-201ENST00000362705 72 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 SNORD115-44-201ENST00000365391 82 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 RNA5SP299-201ENST00000391203 116 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 RNA5SP95-201ENST00000410319 137 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 snoU13.23-201ENST00000458863 104 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 AL133373.1-201ENST00000497098 94 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 RNU6-947P-201ENST00000516264 106 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 RNU6-122P-201ENST00000516818 107 ntBASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC61Q9Y6R9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC61Q9Y6R9 MIR103A2-201ENST00000362154 78 ntBASIC3.2□□□□□ -1.9
CCDC61Q9Y6R9 SNORD113-4-201ENST00000364802 75 ntBASIC3.2□□□□□ -1.9
CCDC61Q9Y6R9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC3.2□□□□□ -1.9
CCDC61Q9Y6R9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC61Q9Y6R9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC61Q9Y6R9 RNA5SP215-201ENST00000363440 122 ntBASIC3.19□□□□□ -1.9
CCDC61Q9Y6R9 MIR1185-1-201ENST00000408598 86 ntBASIC3.19□□□□□ -1.9
CCDC61Q9Y6R9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC61Q9Y6R9 RNU6-645P-201ENST00000364649 106 ntBASIC3.18□□□□□ -1.9
CCDC61Q9Y6R9 MIR216B-201ENST00000390186 82 ntBASIC3.18□□□□□ -1.9
CCDC61Q9Y6R9 RNA5SP270-201ENST00000411361 118 ntBASIC3.18□□□□□ -1.9
CCDC61Q9Y6R9 AP003716.2-201ENST00000528260 108 ntBASIC3.18□□□□□ -1.9
CCDC61Q9Y6R9 AL161935.2-201ENST00000414627 60 ntBASIC3.17□□□□□ -1.9
CCDC61Q9Y6R9 AC092185.1-201ENST00000491371 97 ntBASIC3.17□□□□□ -1.9
CCDC61Q9Y6R9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC61Q9Y6R9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC61Q9Y6R9 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC61Q9Y6R9 MIR764-201ENST00000390811 85 ntBASIC3.16□□□□□ -1.9
CCDC61Q9Y6R9 snoU13.25-201ENST00000458945 104 ntBASIC3.16□□□□□ -1.9
CCDC61Q9Y6R9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC61Q9Y6R9 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC61Q9Y6R9 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
CCDC61Q9Y6R9 RNU6-495P-201ENST00000362995 107 ntBASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 RNA5SP264-201ENST00000363115 107 ntBASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 RNU6-302P-201ENST00000365249 107 ntBASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 MIR203A-201ENST00000384836 110 ntBASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 AC015712.3-201ENST00000559380 164 ntBASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 RNU6-92P-201ENST00000605893 104 ntBASIC3.15□□□□□ -1.91
CCDC61Q9Y6R9 MIR21-201ENST00000362134 72 ntBASIC3.14□□□□□ -1.91
CCDC61Q9Y6R9 AL591806.2-201ENST00000433122 173 ntBASIC3.14□□□□□ -1.91
CCDC61Q9Y6R9 RPL23AP42-201ENST00000471152 471 ntBASIC3.14□□□□□ -1.91
CCDC61Q9Y6R9 RNU6-250P-201ENST00000516958 103 ntBASIC3.14□□□□□ -1.91
CCDC61Q9Y6R9 MIR6873-201ENST00000622788 63 ntBASIC3.14□□□□□ -1.91
CCDC61Q9Y6R9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC61Q9Y6R9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC61Q9Y6R9 SNORA64-201ENST00000384674 134 ntBASIC3.13□□□□□ -1.91
CCDC61Q9Y6R9 RNU4-88P-201ENST00000411220 86 ntBASIC3.13□□□□□ -1.91
CCDC61Q9Y6R9 JTBP1-201ENST00000441314 247 ntBASIC3.13□□□□□ -1.91
CCDC61Q9Y6R9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC61Q9Y6R9 RNU6-535P-201ENST00000384722 107 ntBASIC3.12□□□□□ -1.91
CCDC61Q9Y6R9 MIR221-201ENST00000385135 110 ntBASIC3.12□□□□□ -1.91
CCDC61Q9Y6R9 SUMO2P12-201ENST00000405924 140 ntBASIC3.12□□□□□ -1.91
CCDC61Q9Y6R9 RNU6ATAC6P-201ENST00000408132 126 ntBASIC3.12□□□□□ -1.91
CCDC61Q9Y6R9 NAMPTP3-201ENST00000569273 224 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms