Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 U6.111-201ENST00000636093 83 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU6-396P-201ENST00000365369 105 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 SNORD41-201ENST00000386967 70 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 snoU13.17-201ENST00000458802 104 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 MIR4264-201ENST00000583520 66 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 SNORD115-31-201ENST00000365318 82 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 MIR154-201ENST00000385243 84 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 SNORD63B-201ENST00000411005 70 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 AC003989.2-201ENST00000440224 169 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 RNU6-531P-201ENST00000516694 104 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 AC103810.8-201ENST00000607347 118 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 uc_338.6-201ENST00000613544 171 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 SNORA25.3-201ENST00000363205 127 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 MIR583-201ENST00000384846 75 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 RNU6-205P-201ENST00000390858 107 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 RNU7-62P-201ENST00000458856 62 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 RNU6-1194P-201ENST00000516208 104 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 Y_RNA.36-201ENST00000362602 112 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU6-330P-201ENST00000363015 107 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNA5SP259-201ENST00000365541 109 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU6-471P-201ENST00000383944 106 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 SNORA8.1-201ENST00000384250 140 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 MT-TF-201ENST00000387314 71 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU6-663P-201ENST00000391105 106 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 SNORA25.16-201ENST00000516741 121 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 MIR4491-201ENST00000581087 68 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU4-58P-201ENST00000363192 141 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 MIR9-3-201ENST00000385084 90 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 U8.13-201ENST00000390842 128 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 RNU6-922P-201ENST00000516753 99 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 RNU6-1051P-201ENST00000365471 102 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR30A-201ENST00000385092 71 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR513A1-201ENST00000385138 129 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MT-TN-201ENST00000387400 73 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 Y_RNA.588-201ENST00000391254 102 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR942-201ENST00000401111 86 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 AL161935.2-201ENST00000414627 60 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 RNU7-156P-201ENST00000517214 74 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR8074-201ENST00000615081 81 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 RNU6-53P-201ENST00000365367 106 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 RNU6-154P-201ENST00000384306 106 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 snoU13.25-201ENST00000458945 104 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 RPL30P7-201ENST00000479312 323 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 MIR3198-2-201ENST00000577868 80 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.207-201ENST00000364142 106 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RNU6-291P-201ENST00000384720 107 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 AL606490.4-201ENST00000423117 127 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RNU7-195P-201ENST00000458793 62 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL429P-201ENST00000479090 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL489P-201ENST00000486185 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL327P-201ENST00000488659 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 TRAJ51-201ENST00000504127 63 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 MIR2115-201ENST00000516657 100 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL853P-201ENST00000617250 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RNU6-340P-201ENST00000364005 107 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 RNU6-439P-201ENST00000384188 106 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 SNORD100-201ENST00000408573 76 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 HMGN2P23-201ENST00000456759 269 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC008834.1-201ENST00000511612 175 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC005520.4-201ENST00000604337 90 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC084768.2-201ENST00000622736 221 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 SNORD93-201ENST00000408813 74 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 RNU11-2P-201ENST00000516898 142 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 TRDV1-202ENST00000621643 102 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 MIR6516-201ENST00000630554 81 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 ZNF209P-201ENST00000593450 2304 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.239-201ENST00000364444 113 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 RNU6-987P-201ENST00000384759 104 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 MTND4LP19-201ENST00000403051 166 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RNU6-403P-201ENST00000363163 104 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RNU1-36P-201ENST00000365130 165 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RNY4P3-201ENST00000365254 95 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 MIR519A1-201ENST00000385257 85 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RPS27P16-201ENST00000425758 201 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 JTBP1-201ENST00000441314 247 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 AP003716.2-201ENST00000528260 108 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 283.9 ms