Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 U6.111-201ENST00000636093 83 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU6-396P-201ENST00000365369 105 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 SNORD41-201ENST00000386967 70 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 snoU13.17-201ENST00000458802 104 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 MIR4264-201ENST00000583520 66 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.03□□□□□ -2.08
CCDC39Q9UFE4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 SNORD115-31-201ENST00000365318 82 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 MIR154-201ENST00000385243 84 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 SNORD63B-201ENST00000411005 70 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 AC003989.2-201ENST00000440224 169 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 RNU6-531P-201ENST00000516694 104 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 AC103810.8-201ENST00000607347 118 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 uc_338.6-201ENST00000613544 171 ntBASIC2.02□□□□□ -2.09
CCDC39Q9UFE4 SNORA25.3-201ENST00000363205 127 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 MIR583-201ENST00000384846 75 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 RNU6-205P-201ENST00000390858 107 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 RNU7-62P-201ENST00000458856 62 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 RNU6-1194P-201ENST00000516208 104 ntBASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC39Q9UFE4 Y_RNA.36-201ENST00000362602 112 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU6-330P-201ENST00000363015 107 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNA5SP259-201ENST00000365541 109 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU6-471P-201ENST00000383944 106 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 SNORA8.1-201ENST00000384250 140 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 MT-TF-201ENST00000387314 71 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU6-663P-201ENST00000391105 106 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 SNORA25.16-201ENST00000516741 121 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 MIR4491-201ENST00000581087 68 ntBASIC2□□□□□ -2.09
CCDC39Q9UFE4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC39Q9UFE4 RNU4-58P-201ENST00000363192 141 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 MIR9-3-201ENST00000385084 90 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 U8.13-201ENST00000390842 128 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 RNU6-922P-201ENST00000516753 99 ntBASIC1.99□□□□□ -2.09
CCDC39Q9UFE4 RNU6-1051P-201ENST00000365471 102 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR30A-201ENST00000385092 71 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR513A1-201ENST00000385138 129 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MT-TN-201ENST00000387400 73 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 Y_RNA.588-201ENST00000391254 102 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR942-201ENST00000401111 86 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 AL161935.2-201ENST00000414627 60 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 RNU7-156P-201ENST00000517214 74 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 MIR8074-201ENST00000615081 81 ntBASIC1.98□□□□□ -2.09
CCDC39Q9UFE4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 RNU6-53P-201ENST00000365367 106 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 RNU6-154P-201ENST00000384306 106 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 snoU13.25-201ENST00000458945 104 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 RPL30P7-201ENST00000479312 323 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 MIR3198-2-201ENST00000577868 80 ntBASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC39Q9UFE4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.207-201ENST00000364142 106 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RNU6-291P-201ENST00000384720 107 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 AL606490.4-201ENST00000423117 127 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RNU7-195P-201ENST00000458793 62 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL429P-201ENST00000479090 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL489P-201ENST00000486185 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL327P-201ENST00000488659 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 TRAJ51-201ENST00000504127 63 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 MIR2115-201ENST00000516657 100 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RN7SL853P-201ENST00000617250 223 ntBASIC1.96□□□□□ -2.1
CCDC39Q9UFE4 RNU6-340P-201ENST00000364005 107 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 RNU6-439P-201ENST00000384188 106 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 SNORD100-201ENST00000408573 76 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 HMGN2P23-201ENST00000456759 269 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC008834.1-201ENST00000511612 175 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC005520.4-201ENST00000604337 90 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 AC084768.2-201ENST00000622736 221 ntBASIC1.95□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 SNORD93-201ENST00000408813 74 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 RNU11-2P-201ENST00000516898 142 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 TRDV1-202ENST00000621643 102 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 MIR6516-201ENST00000630554 81 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 ZNF209P-201ENST00000593450 2304 ntBASIC1.94□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.239-201ENST00000364444 113 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 RNU6-987P-201ENST00000384759 104 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 MTND4LP19-201ENST00000403051 166 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.93□□□□□ -2.1
CCDC39Q9UFE4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RNU6-403P-201ENST00000363163 104 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RNU1-36P-201ENST00000365130 165 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RNY4P3-201ENST00000365254 95 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 MIR519A1-201ENST00000385257 85 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 RPS27P16-201ENST00000425758 201 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 JTBP1-201ENST00000441314 247 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 AP003716.2-201ENST00000528260 108 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 199.5 ms