Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 Y_RNA.116-201ENST00000363292 103 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-392P-201ENST00000364926 101 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 BX276092.1-201ENST00000427368 251 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-406P-201ENST00000516470 107 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 AC138907.6-201ENST00000568401 126 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 AC138869.1-201ENST00000568623 124 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 MIR4498-201ENST00000577599 66 ntBASIC0.67□□□□□ -2.3
CCDC28AQ8IWP9 Y_RNA.49-201ENST00000362714 112 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 RNY1P10-201ENST00000363268 113 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-571P-201ENST00000384128 107 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 SNORD116-21-201ENST00000384507 92 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 Y_RNA.549-201ENST00000384657 102 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 MIR635-201ENST00000384830 98 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 AL353813.1-201ENST00000440700 253 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-1053P-201ENST00000515930 101 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 RNA5SP94-201ENST00000516917 108 ntBASIC0.66□□□□□ -2.3
CCDC28AQ8IWP9 RNA5SP432-201ENST00000362480 116 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 SNORD18A-201ENST00000363753 72 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 SNORD38.1-201ENST00000363863 68 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-1229P-201ENST00000364295 107 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 MIR532-201ENST00000385025 91 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 RNU2-51P-201ENST00000410708 197 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 AC092628.1-201ENST00000436250 252 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 SNRPGP12-201ENST00000449481 213 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-412P-201ENST00000516434 106 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 AC068339.1-201ENST00000526965 141 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 MTND5P40-201ENST00000559945 246 ntBASIC0.65□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-834P-201ENST00000362367 110 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNA5SP245-201ENST00000364239 121 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.281-201ENST00000364774 94 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-1201P-201ENST00000384227 107 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-1144P-201ENST00000384247 104 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-476P-201ENST00000384726 107 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.567-201ENST00000384736 106 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-1064P-201ENST00000410626 104 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 AL606753.1-201ENST00000427435 87 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-1006P-201ENST00000516998 103 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 AC018659.1-201ENST00000551083 169 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 MIR4639-201ENST00000584938 69 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 AC092634.7-201ENST00000621022 103 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 MIR6866-201ENST00000638146 69 ntBASIC0.64□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-170P-201ENST00000362832 104 ntBASIC0.63□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-945P-201ENST00000383947 107 ntBASIC0.63□□□□□ -2.31
CCDC28AQ8IWP9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.63□□□□□ -2.31
CCDC28AQ8IWP9 AC244505.6-201ENST00000452829 130 ntBASIC0.63□□□□□ -2.31
CCDC28AQ8IWP9 AL442128.1-201ENST00000615151 90 ntBASIC0.63□□□□□ -2.31
CCDC28AQ8IWP9 U8.6-201ENST00000364939 135 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.377-201ENST00000365644 108 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-321P-201ENST00000410912 106 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 RNA5SP121-201ENST00000516537 101 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-850P-201ENST00000516934 103 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 MIR4694-201ENST00000578534 80 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 MIR5009-201ENST00000578736 100 ntBASIC0.62□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.35-201ENST00000362601 101 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-1056P-201ENST00000383996 107 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 SPINT5P-201ENST00000448174 155 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 AC097635.1-201ENST00000450678 155 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 TRAJ51-201ENST00000504127 63 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 AC096720.1-201ENST00000604441 183 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 RNU6-90P-201ENST00000606352 106 ntBASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
CCDC28AQ8IWP9 SNORD28-201ENST00000384706 75 ntBASIC0.6□□□□□ -2.31
CCDC28AQ8IWP9 MIR519A1-201ENST00000385257 85 ntBASIC0.6□□□□□ -2.31
CCDC28AQ8IWP9 MIR548G-201ENST00000408442 89 ntBASIC0.6□□□□□ -2.31
CCDC28AQ8IWP9 RN7SKP12-201ENST00000516275 143 ntBASIC0.6□□□□□ -2.31
CCDC28AQ8IWP9 SCARNA16.5-201ENST00000517114 183 ntBASIC0.6□□□□□ -2.31
CCDC28AQ8IWP9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.6□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.247-201ENST00000364500 92 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 RNA5SP517-201ENST00000364724 117 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.323-201ENST00000365157 109 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 Y_RNA.342-201ENST00000365352 113 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 MIR577-201ENST00000385196 96 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 SNORD63B-201ENST00000411005 70 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 SNORD71-201ENST00000411292 86 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 RNA5SP47-201ENST00000517230 109 ntBASIC0.59□□□□□ -2.31
CCDC28AQ8IWP9 RNY3P2-201ENST00000362918 102 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 SNORD115-24-201ENST00000363528 82 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 SNORD114-27-201ENST00000363766 70 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 RNU6-1107P-201ENST00000364817 104 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 SNORA8.2-201ENST00000384372 139 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 RNU6-1081P-201ENST00000384537 107 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 SNORA19-201ENST00000384737 128 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 SNORA40.8-201ENST00000411034 126 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 MIR4698-201ENST00000577795 80 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 AC244669.1-204ENST00000621564 178 ntBASIC0.58□□□□□ -2.32
CCDC28AQ8IWP9 RNU6-832P-201ENST00000363319 107 ntBASIC0.57□□□□□ -2.32
CCDC28AQ8IWP9 SNORA36.1-201ENST00000363424 132 ntBASIC0.57□□□□□ -2.32
CCDC28AQ8IWP9 MIR599-201ENST00000385069 95 ntBASIC0.57□□□□□ -2.32
CCDC28AQ8IWP9 AL603825.1-201ENST00000438481 80 ntBASIC0.57□□□□□ -2.32
CCDC28AQ8IWP9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.57□□□□□ -2.32
CCDC28AQ8IWP9 RNA5SP268-201ENST00000516828 124 ntBASIC0.57□□□□□ -2.32
CCDC28AQ8IWP9 uc_338.17-201ENST00000619633 179 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms