Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.659-201ENST00000515994 113 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 RNU6-1006P-201ENST00000516998 103 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 SNORA74.3-201ENST00000517108 154 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 MTND5P40-201ENST00000559945 246 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.87□□□□□ -2.27
COL4A4P53420 U1.36-201ENST00000620684 176 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 Y_RNA.247-201ENST00000364500 92 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 RNU6-652P-201ENST00000365488 107 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 RNU6-1201P-201ENST00000384227 107 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 Y_RNA.611-201ENST00000410682 108 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 RNA5SP501-201ENST00000410990 112 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 SNORD67.1-201ENST00000516618 108 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 RNA5SP481-201ENST00000516814 122 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 SNORA31.17-201ENST00000516953 127 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 RNA5SP437-201ENST00000517249 129 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.86□□□□□ -2.27
COL4A4P53420 MIR4709-201ENST00000577272 72 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 PRELID3BP2-201ENST00000605362 201 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 MIR8065-201ENST00000620577 100 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 Z97988.1-201ENST00000637697 135 ntBASIC0.86□□□□□ -2.27
COL4A4P53420 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.85□□□□□ -2.27
COL4A4P53420 RNU6-633P-201ENST00000362612 103 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 SNORD116-10-201ENST00000363791 102 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNY1P13-201ENST00000365030 105 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNU6-524P-201ENST00000384270 107 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNU6-813P-201ENST00000384691 107 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNU6-955P-201ENST00000410497 104 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNA5SP100-201ENST00000410903 110 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNA5SP59-201ENST00000410922 110 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 AL161932.1-201ENST00000437408 146 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 AL353813.1-201ENST00000440700 253 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNU7-48P-201ENST00000458875 63 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNU7-34P-201ENST00000459394 64 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 RNU7-53P-201ENST00000516705 60 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 AC133485.1-201ENST00000567176 124 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 AC138907.6-201ENST00000568401 126 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 MIR4299-201ENST00000577899 72 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 MIR4500-201ENST00000579472 76 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 MIR548AE2-201ENST00000583456 67 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 MIR548Z-201ENST00000584743 97 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 MIR6841-201ENST00000637129 72 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 MIR4662A-201ENST00000637499 67 ntBASIC0.85□□□□□ -2.27
COL4A4P53420 Y_RNA.73-201ENST00000362910 113 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 SNORD38.1-201ENST00000363863 68 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 Y_RNA.244-201ENST00000364484 109 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 RNU6-949P-201ENST00000384040 107 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 MIR597-201ENST00000384968 97 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 MIR934-201ENST00000401241 83 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 AC090844.1-201ENST00000422019 156 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 RPL39P39-201ENST00000455840 151 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 snoU13.2-201ENST00000459201 104 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 RNU6-638P-201ENST00000516582 104 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 MIR4668-201ENST00000582284 70 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 MIR376B-201ENST00000614515 100 ntBASIC0.84□□□□□ -2.27
COL4A4P53420 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.84□□□□□ -2.27
COL4A4P53420 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.84□□□□□ -2.28
COL4A4P53420 MIR424-201ENST00000362227 98 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 RNU6-624P-201ENST00000363411 107 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 RNU6-509P-201ENST00000363519 107 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 RNU6-219P-201ENST00000364728 107 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
COL4A4P53420 MIR1265-201ENST00000408444 86 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 AC099513.1-201ENST00000490423 301 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 AC105081.1-201ENST00000617727 106 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 AC067863.3-201ENST00000624172 122 ntBASIC0.84□□□□□ -2.28
COL4A4P53420 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.84□□□□□ -2.28
COL4A4P53420 RNU6-497P-201ENST00000365316 104 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 Y_RNA.567-201ENST00000384736 106 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 SNORA48.1-201ENST00000390879 135 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 RNU6-1190P-201ENST00000410811 104 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 BX276092.1-201ENST00000427368 251 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 RNA5SP285-201ENST00000516619 119 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.83□□□□□ -2.28
COL4A4P53420 AC019288.1-201ENST00000557918 224 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 MIR548AO-201ENST00000579992 96 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 MIR6835-201ENST00000621552 64 ntBASIC0.83□□□□□ -2.28
COL4A4P53420 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
COL4A4P53420 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
COL4A4P53420 RNA5SP133-201ENST00000363368 119 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 RNU6-396P-201ENST00000365369 105 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 MIR181B2-201ENST00000385004 89 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.82□□□□□ -2.28
COL4A4P53420 RNU6-857P-201ENST00000515893 110 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 RNU6-917P-201ENST00000516294 104 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.82□□□□□ -2.28
COL4A4P53420 CYP3A52P-201ENST00000563326 91 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 AL513043.2-201ENST00000573941 143 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 MIR5588-201ENST00000581890 63 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 MIR4636-201ENST00000582271 80 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 MIR4713-201ENST00000582691 75 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 MIR3192-201ENST00000584920 77 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 AP000753.3-201ENST00000604083 169 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 MIR6759-201ENST00000638110 65 ntBASIC0.82□□□□□ -2.28
COL4A4P53420 RNU6-1125P-201ENST00000363601 107 ntBASIC0.81□□□□□ -2.28
COL4A4P53420 Y_RNA.221-201ENST00000364248 96 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 188.7 ms