Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNA5SP95-201ENST00000410319 137 ntBASIC1.88□□□□□ -2.11
LIG1P18858 RNU6-1054P-201ENST00000411293 104 ntBASIC1.88□□□□□ -2.11
LIG1P18858 Y_RNA.648-201ENST00000459455 110 ntBASIC1.88□□□□□ -2.11
LIG1P18858 RNA5SP458-201ENST00000516188 119 ntBASIC1.88□□□□□ -2.11
LIG1P18858 AL512310.8-201ENST00000550183 120 ntBASIC1.88□□□□□ -2.11
LIG1P18858 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIG1P18858 Y_RNA.316-201ENST00000365118 111 ntBASIC1.87□□□□□ -2.11
LIG1P18858 RNU1-36P-201ENST00000365130 165 ntBASIC1.87□□□□□ -2.11
LIG1P18858 RNU6-652P-201ENST00000365488 107 ntBASIC1.87□□□□□ -2.11
LIG1P18858 RNU6-24P-201ENST00000384440 107 ntBASIC1.87□□□□□ -2.11
LIG1P18858 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.87□□□□□ -2.11
LIG1P18858 MIR502-201ENST00000606349 86 ntBASIC1.87□□□□□ -2.11
LIG1P18858 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.87□□□□□ -2.11
LIG1P18858 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LIG1P18858 RNU4-58P-201ENST00000363192 141 ntBASIC1.86□□□□□ -2.11
LIG1P18858 RNU6-53P-201ENST00000365367 106 ntBASIC1.86□□□□□ -2.11
LIG1P18858 MIR1236-201ENST00000408340 102 ntBASIC1.86□□□□□ -2.11
LIG1P18858 SNORD93-201ENST00000408813 74 ntBASIC1.86□□□□□ -2.11
LIG1P18858 RNU6-1194P-201ENST00000516208 104 ntBASIC1.86□□□□□ -2.11
LIG1P18858 AC140658.3-201ENST00000567603 271 ntBASIC1.86□□□□□ -2.11
LIG1P18858 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
LIG1P18858 SNORD36A-201ENST00000362874 73 ntBASIC1.85□□□□□ -2.11
LIG1P18858 SNORD115-37-201ENST00000363768 82 ntBASIC1.85□□□□□ -2.11
LIG1P18858 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
LIG1P18858 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.85□□□□□ -2.11
LIG1P18858 RNU7-85P-201ENST00000458851 63 ntBASIC1.85□□□□□ -2.11
LIG1P18858 RNU6-531P-201ENST00000516694 104 ntBASIC1.85□□□□□ -2.11
LIG1P18858 MIR4255-201ENST00000579351 72 ntBASIC1.85□□□□□ -2.11
LIG1P18858 RNU6-1254P-201ENST00000391266 104 ntBASIC1.84□□□□□ -2.11
LIG1P18858 SNORA25.16-201ENST00000516741 121 ntBASIC1.84□□□□□ -2.11
LIG1P18858 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.84□□□□□ -2.11
LIG1P18858 MIR516A2-201ENST00000384888 90 ntBASIC1.83□□□□□ -2.12
LIG1P18858 MIR516A1-201ENST00000385033 90 ntBASIC1.83□□□□□ -2.12
LIG1P18858 RPS29P23-201ENST00000458635 123 ntBASIC1.83□□□□□ -2.12
LIG1P18858 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.83□□□□□ -2.12
LIG1P18858 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
LIG1P18858 SNORD113.3-201ENST00000364630 78 ntBASIC1.82□□□□□ -2.12
LIG1P18858 SNORA72.6-201ENST00000384520 129 ntBASIC1.82□□□□□ -2.12
LIG1P18858 RNU6-243P-201ENST00000391140 107 ntBASIC1.82□□□□□ -2.12
LIG1P18858 RNU7-185P-201ENST00000459215 60 ntBASIC1.82□□□□□ -2.12
LIG1P18858 RNU6-902P-201ENST00000517212 91 ntBASIC1.82□□□□□ -2.12
LIG1P18858 AC019288.1-201ENST00000557918 224 ntBASIC1.82□□□□□ -2.12
LIG1P18858 Y_RNA.94-201ENST00000363068 106 ntBASIC1.81□□□□□ -2.12
LIG1P18858 MIR320A-201ENST00000385302 82 ntBASIC1.81□□□□□ -2.12
LIG1P18858 RPS27P16-201ENST00000425758 201 ntBASIC1.81□□□□□ -2.12
LIG1P18858 RNU6-403P-201ENST00000363163 104 ntBASIC1.8□□□□□ -2.12
LIG1P18858 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.8□□□□□ -2.12
LIG1P18858 AC048334.1-201ENST00000477975 159 ntBASIC1.8□□□□□ -2.12
LIG1P18858 RNU7-153P-201ENST00000516455 62 ntBASIC1.8□□□□□ -2.12
LIG1P18858 AC036111.3-201ENST00000526389 112 ntBASIC1.8□□□□□ -2.12
LIG1P18858 AC023934.1-201ENST00000574529 2389 ntBASIC1.8□□□□□ -2.12
LIG1P18858 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
LIG1P18858 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LIG1P18858 RNU4-32P-201ENST00000363404 141 ntBASIC1.79□□□□□ -2.12
LIG1P18858 SNORA17.3-201ENST00000391159 129 ntBASIC1.79□□□□□ -2.12
LIG1P18858 RNU7-106P-201ENST00000459514 67 ntBASIC1.79□□□□□ -2.12
LIG1P18858 AC023790.1-201ENST00000482174 347 ntBASIC1.79□□□□□ -2.12
LIG1P18858 Y_RNA.676-201ENST00000516393 96 ntBASIC1.79□□□□□ -2.12
LIG1P18858 SNORA25.13-201ENST00000516395 103 ntBASIC1.79□□□□□ -2.12
LIG1P18858 MIR26B-201ENST00000362251 77 ntBASIC1.78□□□□□ -2.12
LIG1P18858 MIR1257-201ENST00000408490 117 ntBASIC1.78□□□□□ -2.12
LIG1P18858 SNORD100-201ENST00000408573 76 ntBASIC1.78□□□□□ -2.12
LIG1P18858 RNU6-955P-201ENST00000410497 104 ntBASIC1.78□□□□□ -2.12
LIG1P18858 SNORD63B-201ENST00000411005 70 ntBASIC1.78□□□□□ -2.12
LIG1P18858 snoU13.11-201ENST00000459219 104 ntBASIC1.78□□□□□ -2.12
LIG1P18858 snoU13.21-201ENST00000459368 105 ntBASIC1.78□□□□□ -2.12
LIG1P18858 RN7SKP88-201ENST00000516847 250 ntBASIC1.78□□□□□ -2.12
LIG1P18858 MIR4536-1-201ENST00000583537 88 ntBASIC1.78□□□□□ -2.12
LIG1P18858 RNU7-10P-201ENST00000607194 63 ntBASIC1.78□□□□□ -2.12
LIG1P18858 7SK.8-201ENST00000612110 250 ntBASIC1.78□□□□□ -2.12
LIG1P18858 7SK.11-201ENST00000615477 250 ntBASIC1.78□□□□□ -2.12
LIG1P18858 7SK.13-201ENST00000622040 250 ntBASIC1.78□□□□□ -2.12
LIG1P18858 RNU6-624P-201ENST00000363411 107 ntBASIC1.77□□□□□ -2.13
LIG1P18858 Y_RNA.221-201ENST00000364248 96 ntBASIC1.77□□□□□ -2.13
LIG1P18858 RNU6-934P-201ENST00000365154 107 ntBASIC1.77□□□□□ -2.13
LIG1P18858 Y_RNA.508-201ENST00000384502 114 ntBASIC1.77□□□□□ -2.13
LIG1P18858 MIR519A1-201ENST00000385257 85 ntBASIC1.77□□□□□ -2.13
LIG1P18858 SNORA75.2-201ENST00000391138 150 ntBASIC1.77□□□□□ -2.13
LIG1P18858 SNORA75.3-201ENST00000391231 150 ntBASIC1.77□□□□□ -2.13
LIG1P18858 MIR4303-201ENST00000581299 66 ntBASIC1.77□□□□□ -2.13
LIG1P18858 MIR4712-201ENST00000583750 82 ntBASIC1.77□□□□□ -2.13
LIG1P18858 AC013244.2-201ENST00000603396 103 ntBASIC1.77□□□□□ -2.13
LIG1P18858 MIR6082-201ENST00000613604 109 ntBASIC1.77□□□□□ -2.13
LIG1P18858 Y_RNA.283-201ENST00000364798 112 ntBASIC1.76□□□□□ -2.13
LIG1P18858 Y_RNA.330-201ENST00000365230 109 ntBASIC1.76□□□□□ -2.13
LIG1P18858 Y_RNA.338-201ENST00000365320 114 ntBASIC1.76□□□□□ -2.13
LIG1P18858 RNU6-1296P-201ENST00000383879 107 ntBASIC1.76□□□□□ -2.13
LIG1P18858 MIR635-201ENST00000384830 98 ntBASIC1.76□□□□□ -2.13
LIG1P18858 MIR1323-201ENST00000408090 73 ntBASIC1.76□□□□□ -2.13
LIG1P18858 SNORD111-201ENST00000408139 94 ntBASIC1.76□□□□□ -2.13
LIG1P18858 SNORD83.1-201ENST00000411362 77 ntBASIC1.76□□□□□ -2.13
LIG1P18858 AC108667.1-201ENST00000428618 249 ntBASIC1.76□□□□□ -2.13
LIG1P18858 SNORA31.2-201ENST00000516019 134 ntBASIC1.76□□□□□ -2.13
LIG1P18858 RNU6-65P-201ENST00000516332 98 ntBASIC1.76□□□□□ -2.13
LIG1P18858 RNU6-765P-201ENST00000516916 99 ntBASIC1.76□□□□□ -2.13
LIG1P18858 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.76□□□□□ -2.13
LIG1P18858 MIR548H5-201ENST00000580314 60 ntBASIC1.76□□□□□ -2.13
LIG1P18858 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.76□□□□□ -2.13
LIG1P18858 AC106800.4-201ENST00000614905 153 ntBASIC1.76□□□□□ -2.13
LIG1P18858 MIR4662A-201ENST00000637499 67 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 203.1 ms