Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 MIR4639-201ENST00000584938 69 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.56-201ENST00000362798 112 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.98-201ENST00000363109 102 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.423-201ENST00000384057 113 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 RNU6-187P-201ENST00000384139 106 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 RNU6-429P-201ENST00000384582 108 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 TUG1_4.1-201ENST00000619464 181 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 AC091304.10-201ENST00000641554 121 ntBASIC0.25□□□□□ -2.37
NKX6-3A6NJ46 RNU6-235P-201ENST00000362644 107 ntBASIC0.24□□□□□ -2.37
NKX6-3A6NJ46 RNU6-815P-201ENST00000384080 113 ntBASIC0.24□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.488-201ENST00000384403 102 ntBASIC0.24□□□□□ -2.37
NKX6-3A6NJ46 MIR1273G-201ENST00000577677 100 ntBASIC0.24□□□□□ -2.37
NKX6-3A6NJ46 MIR4752-201ENST00000579672 72 ntBASIC0.24□□□□□ -2.37
NKX6-3A6NJ46 AC087741.2-201ENST00000619415 172 ntBASIC0.24□□□□□ -2.37
NKX6-3A6NJ46 AC090625.1-201ENST00000357130 210 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.205-201ENST00000364128 113 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 RNU6-647P-201ENST00000364243 107 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 SNORD115-35-201ENST00000365122 82 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.328-201ENST00000365208 113 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 MIR548L-201ENST00000408303 86 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 RNU2-59P-201ENST00000410482 191 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 MIR548H5-201ENST00000580314 60 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.773-201ENST00000607168 90 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 MIR376B-201ENST00000614515 100 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 AP001340.1-201ENST00000624405 217 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 AP001362.1-201ENST00000625165 124 ntBASIC0.23□□□□□ -2.37
NKX6-3A6NJ46 MIR330-201ENST00000362196 94 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.170-201ENST00000363746 110 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.221-201ENST00000364248 96 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 MIR635-201ENST00000384830 98 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 RNU7-104P-201ENST00000459398 79 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 RNU7-129P-201ENST00000516128 62 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 RNU6-781P-201ENST00000516377 101 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 RNU6-794P-201ENST00000517261 64 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 AC138869.1-201ENST00000568623 124 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 MIR3163-201ENST00000581592 73 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 U7.2-201ENST00000607576 63 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 MIR6828-201ENST00000636181 60 ntBASIC0.22□□□□□ -2.37
NKX6-3A6NJ46 Y_RNA.213-201ENST00000364178 111 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 RNU6-1327P-201ENST00000365302 105 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 MIR34C-201ENST00000384831 77 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 MIR759-201ENST00000390224 91 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 RNU6-735P-201ENST00000410612 107 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 AC108059.2-201ENST00000434626 151 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 AL158147.1-201ENST00000443970 75 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 AC108740.1-201ENST00000498629 225 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 TRAJ51-201ENST00000504127 63 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 RNU6-346P-201ENST00000516288 111 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 RNU6-1061P-201ENST00000516530 99 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 MIR1255B1-201ENST00000636325 63 ntBASIC0.21□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.127-201ENST00000363386 109 ntBASIC0.2□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.528-201ENST00000384575 108 ntBASIC0.2□□□□□ -2.38
NKX6-3A6NJ46 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.2□□□□□ -2.38
NKX6-3A6NJ46 RNU6-521P-201ENST00000516663 105 ntBASIC0.2□□□□□ -2.38
NKX6-3A6NJ46 MIR924-201ENST00000638017 53 ntBASIC0.2□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.258-201ENST00000364613 105 ntBASIC0.19□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.555-201ENST00000384673 110 ntBASIC0.19□□□□□ -2.38
NKX6-3A6NJ46 SNORA7.5-201ENST00000410672 110 ntBASIC0.19□□□□□ -2.38
NKX6-3A6NJ46 AC244505.6-201ENST00000452829 130 ntBASIC0.19□□□□□ -2.38
NKX6-3A6NJ46 RNU7-161P-201ENST00000517289 62 ntBASIC0.19□□□□□ -2.38
NKX6-3A6NJ46 MIR6755-201ENST00000619993 66 ntBASIC0.19□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.198-201ENST00000364013 98 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 MIR599-201ENST00000385069 95 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 RNU7-200P-201ENST00000516105 62 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 RNU6-255P-201ENST00000516957 105 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 MIR3671-201ENST00000580455 88 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 AC023932.2-201ENST00000603176 175 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 RNU7-10P-201ENST00000607194 63 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
NKX6-3A6NJ46 RNU6-1099P-201ENST00000363533 107 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.360-201ENST00000365512 102 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 RNA5SP136-201ENST00000410906 107 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 MTND4LP9-201ENST00000427694 174 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 RNU7-195P-201ENST00000458793 62 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 SNORA62.5-201ENST00000516634 120 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 RNA5SP330-201ENST00000517096 96 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 AC069113.3-201ENST00000521019 150 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 MIR8087-201ENST00000612745 78 ntBASIC0.17□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.180-201ENST00000363867 113 ntBASIC0.16□□□□□ -2.38
NKX6-3A6NJ46 Y_RNA.280-201ENST00000364765 112 ntBASIC0.16□□□□□ -2.38
NKX6-3A6NJ46 MIR760-201ENST00000390220 80 ntBASIC0.16□□□□□ -2.38
NKX6-3A6NJ46 SNORD63B-201ENST00000411005 70 ntBASIC0.16□□□□□ -2.38
NKX6-3A6NJ46 RNU6-1234P-201ENST00000516877 103 ntBASIC0.16□□□□□ -2.38
NKX6-3A6NJ46 MIR4514-201ENST00000581410 57 ntBASIC0.16□□□□□ -2.38
NKX6-3A6NJ46 RNU6-726P-201ENST00000364680 107 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 Y_RNA.343-201ENST00000365354 112 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 RNU6-1126P-201ENST00000384002 107 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 RNU6-1211P-201ENST00000459179 105 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 RNU6-863P-201ENST00000515989 104 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 MTND5P40-201ENST00000559945 246 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 AC067863.3-201ENST00000624172 122 ntBASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.15□□□□□ -2.39
NKX6-3A6NJ46 SNORD115-19-201ENST00000363098 82 ntBASIC0.14□□□□□ -2.39
NKX6-3A6NJ46 SNORD115-18-201ENST00000363293 82 ntBASIC0.14□□□□□ -2.39
NKX6-3A6NJ46 SNORD115-17-201ENST00000364612 82 ntBASIC0.14□□□□□ -2.39
NKX6-3A6NJ46 Y_RNA.464-201ENST00000384282 110 ntBASIC0.14□□□□□ -2.39
NKX6-3A6NJ46 MIR548D2-201ENST00000384955 97 ntBASIC0.14□□□□□ -2.39
NKX6-3A6NJ46 RNA5SP299-201ENST00000391203 116 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms