Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RNY1P8-201ENST00000383970 114 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.588-201ENST00000391254 102 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 AC114737.2-201ENST00000421583 173 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 MIR1270-201ENST00000459320 83 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 RNU7-123P-201ENST00000515911 60 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 RNU5E-3P-201ENST00000515913 68 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 MIR3121-201ENST00000579680 77 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 AC090897.1-201ENST00000580909 226 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 MIR4491-201ENST00000581087 68 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 AC021443.1-201ENST00000604478 211 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 MIR8066-201ENST00000617280 78 ntBASIC0.58□□□□□ -2.32
ZNF541Q9H0D2 MIR18A-201ENST00000362310 71 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.42-201ENST00000362660 108 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.180-201ENST00000363867 113 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 RNU6-915P-201ENST00000364943 103 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 RNU4-45P-201ENST00000365469 141 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.400-201ENST00000383963 111 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 SNORA32-201ENST00000384072 121 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 RNU7-164P-201ENST00000459221 62 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 MIR548AE2-201ENST00000583456 67 ntBASIC0.57□□□□□ -2.32
ZNF541Q9H0D2 MIR140-201ENST00000385282 100 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 RNU6-907P-201ENST00000390924 102 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 MIR513C-201ENST00000401352 84 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 SNORD100-201ENST00000408573 76 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 RNU6-448P-201ENST00000517052 107 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 IGKV1-22-201ENST00000524313 326 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 MIR548X2-201ENST00000579776 100 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 AL627230.5-201ENST00000619807 58 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 AC067863.3-201ENST00000624172 122 ntBASIC0.56□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.13-201ENST00000362403 112 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.170-201ENST00000363746 110 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.215-201ENST00000364204 112 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.298-201ENST00000364960 107 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 MIR569-201ENST00000385228 96 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.617-201ENST00000410920 90 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 RNA5SP272-201ENST00000516095 111 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 DEFB131E-201ENST00000532329 154 ntBASIC0.55□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.420-201ENST00000384043 110 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 Y_RNA.464-201ENST00000384282 110 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 RNU6-1104P-201ENST00000384723 104 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 AC002350.1-201ENST00000490759 375 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 RNU6-469P-201ENST00000516253 101 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 AC022523.2-201ENST00000561045 150 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 AL359881.1-201ENST00000602916 267 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 AL137067.1-201ENST00000615933 120 ntBASIC0.54□□□□□ -2.32
ZNF541Q9H0D2 RNU6-945P-201ENST00000383947 107 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 SNORD67.1-201ENST00000516618 108 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 RNY4P20-201ENST00000516678 93 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 SNORA25.16-201ENST00000516741 121 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 RNU6-255P-201ENST00000516957 105 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 RNU6-1212P-201ENST00000517023 104 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 MIR6082-201ENST00000613604 109 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 AP001340.1-201ENST00000624405 217 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 MIR6759-201ENST00000638110 65 ntBASIC0.53□□□□□ -2.32
ZNF541Q9H0D2 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 RNU7-200P-201ENST00000516105 62 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 Y_RNA.692-201ENST00000516627 105 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 RNU7-137P-201ENST00000516788 62 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 AP001328.1-201ENST00000528550 176 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 uc_338.17-201ENST00000619633 179 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 AC092634.7-201ENST00000621022 103 ntBASIC0.52□□□□□ -2.33
ZNF541Q9H0D2 Y_RNA.114-201ENST00000363265 113 ntBASIC0.51□□□□□ -2.33
ZNF541Q9H0D2 MIR548I1-201ENST00000408810 149 ntBASIC0.51□□□□□ -2.33
ZNF541Q9H0D2 RNU4-69P-201ENST00000410677 143 ntBASIC0.51□□□□□ -2.33
ZNF541Q9H0D2 RNU6-426P-201ENST00000516464 97 ntBASIC0.51□□□□□ -2.33
ZNF541Q9H0D2 MIR3668-201ENST00000582138 75 ntBASIC0.51□□□□□ -2.33
ZNF541Q9H0D2 uc_338.16-201ENST00000621804 95 ntBASIC0.51□□□□□ -2.33
ZNF541Q9H0D2 SNORA50A-201ENST00000384225 134 ntBASIC0.5□□□□□ -2.33
ZNF541Q9H0D2 Y_RNA.506-201ENST00000384494 102 ntBASIC0.5□□□□□ -2.33
ZNF541Q9H0D2 MIR329-2-201ENST00000385029 84 ntBASIC0.5□□□□□ -2.33
ZNF541Q9H0D2 MT-TI-201ENST00000387365 69 ntBASIC0.5□□□□□ -2.33
ZNF541Q9H0D2 AC105081.1-201ENST00000617727 106 ntBASIC0.5□□□□□ -2.33
ZNF541Q9H0D2 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 RNU4-67P-201ENST00000364569 141 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 MIR1265-201ENST00000408444 86 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 RNU6-346P-201ENST00000516288 111 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 Y_RNA.697-201ENST00000516776 113 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 AP003327.1-201ENST00000529684 127 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 AC138749.4-201ENST00000563970 127 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 MTND5P34-201ENST00000568888 325 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 MIR3678-201ENST00000578455 94 ntBASIC0.49□□□□□ -2.33
ZNF541Q9H0D2 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 RNA5SP133-201ENST00000363368 119 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 SNORD114-10-201ENST00000363409 72 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 Y_RNA.299-201ENST00000364973 94 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 Y_RNA.488-201ENST00000384403 102 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 SNORD71-201ENST00000411292 86 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 RN7SKP19-201ENST00000516016 252 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 RNU6-531P-201ENST00000516694 104 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 RNU6-765P-201ENST00000516916 99 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.48□□□□□ -2.33
ZNF541Q9H0D2 MIR644A-201ENST00000385262 94 ntBASIC0.47□□□□□ -2.33
ZNF541Q9H0D2 MT-TR-201ENST00000387439 65 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms