Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 AL109933.3-201ENST00000619095 188 ntBASIC2.55□□□□□ -2
CNTNAP3BQ96NU0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.55□□□□□ -2
CNTNAP3BQ96NU0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 Y_RNA.224-201ENST00000364308 111 ntBASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 Y_RNA.374-201ENST00000365606 101 ntBASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 MIR588-201ENST00000384900 83 ntBASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 AC097510.1-201ENST00000510945 133 ntBASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 PRELID3BP2-201ENST00000605362 201 ntBASIC2.54□□□□□ -2
CNTNAP3BQ96NU0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 RNU6-1123P-201ENST00000362347 106 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 SNORA24B-201ENST00000384176 131 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 RNU6-360P-201ENST00000390944 104 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 AC108667.1-201ENST00000428618 249 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 MIR5089-201ENST00000580047 84 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 MIR6740-201ENST00000618268 113 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.53□□□□□ -2
CNTNAP3BQ96NU0 RNU6-824P-201ENST00000363724 104 ntBASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 Y_RNA.239-201ENST00000364444 113 ntBASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 HMGN2P35-201ENST00000412164 270 ntBASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 RPS27P16-201ENST00000425758 201 ntBASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 RNU11-2P-201ENST00000516898 142 ntBASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.52□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-1187P-201ENST00000364771 110 ntBASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 RNU1-138P-201ENST00000384093 164 ntBASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 AL606490.4-201ENST00000423117 127 ntBASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 RPS29P6-201ENST00000438196 145 ntBASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 RNA5SP320-201ENST00000516263 124 ntBASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CNTNAP3BQ96NU0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 U8.13-201ENST00000390842 128 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-604P-201ENST00000390917 100 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 RNA5SP100-201ENST00000410903 110 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 RNA5SP59-201ENST00000410922 110 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 RNA5SP450-201ENST00000411206 102 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 SNORA9.3-201ENST00000516383 129 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-531P-201ENST00000516694 104 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 MIR4696-201ENST00000581431 70 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 MIR3670-2-201ENST00000582974 65 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 MIR3670-1-201ENST00000584160 65 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 MIR3670-3-201ENST00000584855 65 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 MIR3670-4-201ENST00000612260 65 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 TRDV1-202ENST00000621643 102 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.5□□□□□ -2.01
CNTNAP3BQ96NU0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-664P-201ENST00000362381 107 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 MIR519A1-201ENST00000385257 85 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-295P-201ENST00000516901 104 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 SNORA31.25-201ENST00000517242 134 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 MTRNR2L2-201ENST00000604882 87 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 MIR6779-201ENST00000617283 64 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.49□□□□□ -2.01
CNTNAP3BQ96NU0 MIR1302-7-201ENST00000408841 72 ntBASIC2.48□□□□□ -2.01
CNTNAP3BQ96NU0 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.48□□□□□ -2.01
CNTNAP3BQ96NU0 MIR7978-201ENST00000636158 59 ntBASIC2.48□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-1079P-201ENST00000362861 110 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 RNU1-52P-201ENST00000384190 164 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 AL691482.2-201ENST00000457453 84 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 RNU7-195P-201ENST00000458793 62 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 AC003982.1-202ENST00000469928 248 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 TRAJ51-201ENST00000504127 63 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 RNU6-322P-201ENST00000516010 103 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 Y_RNA.722-201ENST00000517279 114 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 DLEU2_3.2-201ENST00000612883 73 ntBASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
CNTNAP3BQ96NU0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.01
CNTNAP3BQ96NU0 RNU4-58P-201ENST00000363192 141 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 SNORD101-201ENST00000384027 73 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 MIR653-201ENST00000385279 96 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 RNU6-1165P-201ENST00000410119 107 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 TRMT112P2-201ENST00000512910 132 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 SNORA25.16-201ENST00000516741 121 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 SNORA31.17-201ENST00000516953 127 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 MIR4491-201ENST00000581087 68 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 U6.100-201ENST00000636230 99 ntBASIC2.46□□□□□ -2.02
CNTNAP3BQ96NU0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CNTNAP3BQ96NU0 RNU6-446P-201ENST00000362827 106 ntBASIC2.45□□□□□ -2.02
CNTNAP3BQ96NU0 Y_RNA.588-201ENST00000391254 102 ntBASIC2.45□□□□□ -2.02
CNTNAP3BQ96NU0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CNTNAP3BQ96NU0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 241.8 ms