Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC005908.1-201ENST00000468701 347 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 AC022202.1-201ENST00000613515 211 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 MIR6717-201ENST00000622747 73 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.91□□□□□ -2.26
COL4A4P53420 AC006160.2-201ENST00000637708 154 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 AC091304.10-201ENST00000641554 121 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-23P-201ENST00000363283 107 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-112P-201ENST00000363599 104 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 SNORA16B-201ENST00000364674 135 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-675P-201ENST00000384236 104 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-1237P-201ENST00000384777 107 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 MIR194-1-201ENST00000384892 85 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-1321P-201ENST00000390905 107 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 Y_RNA.607-201ENST00000410597 98 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 AC245047.7-201ENST00000440265 293 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 snoU13.27-201ENST00000459278 104 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU7-45P-201ENST00000459460 63 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 AC022137.1-201ENST00000483735 151 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 UBL5P1-201ENST00000507979 193 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU7-79P-201ENST00000516082 62 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-267P-201ENST00000516714 103 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNA5SP137-201ENST00000516833 135 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 MIR4439-201ENST00000583746 80 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-90P-201ENST00000606352 106 ntBASIC0.91□□□□□ -2.26
COL4A4P53420 RNU6-1134P-201ENST00000365156 101 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-787P-201ENST00000384032 107 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-616P-201ENST00000384353 107 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 SNORD38B-201ENST00000384690 67 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 MIR520A-201ENST00000384862 85 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 MIR653-201ENST00000385279 96 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-679P-201ENST00000391003 106 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-447P-201ENST00000410293 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-1118P-201ENST00000410382 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-1076P-201ENST00000410397 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-355P-201ENST00000410427 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-791P-201ENST00000410467 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-705P-201ENST00000410601 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-1100P-201ENST00000410691 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-860P-201ENST00000410860 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-1217P-201ENST00000411276 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 RNU6-785P-201ENST00000411324 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 Y_RNA.705-201ENST00000516862 110 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 AC022254.1-201ENST00000567857 235 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 U6.90-201ENST00000614007 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 U6.70-201ENST00000620287 104 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 SNORD38B-202ENST00000625943 69 ntBASIC0.9□□□□□ -2.27
COL4A4P53420 Y_RNA.95-201ENST00000363079 95 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 MIR526A1-201ENST00000384897 85 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 SNORD28B-201ENST00000390993 75 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 HMGN2P39-201ENST00000398005 273 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 SNORA7.5-201ENST00000410672 110 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 RNU6-1086P-201ENST00000410930 100 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 Y_RNA.620-201ENST00000411009 88 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 AC244023.1-201ENST00000426884 112 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 STAG3L5P-204ENST00000443759 179 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 RNU7-2P-201ENST00000516096 62 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 RN7SKP12-201ENST00000516275 143 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 MIR4764-201ENST00000580680 88 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 AC242498.1-201ENST00000604134 111 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 AC243994.1-201ENST00000618627 109 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 AL513423.1-201ENST00000621695 132 ntBASIC0.89□□□□□ -2.27
COL4A4P53420 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
COL4A4P53420 RNU6-1313P-201ENST00000362622 102 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 SNORD114-10-201ENST00000363409 72 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNU6-1276P-201ENST00000365372 104 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 Y_RNA.377-201ENST00000365644 108 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 MIR206-201ENST00000384872 86 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 MIR520C-201ENST00000385005 87 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNU6-913P-201ENST00000390913 95 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 Y_RNA.593-201ENST00000410292 98 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 SNORD123-201ENST00000459473 70 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNU6-162P-201ENST00000516228 103 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNVU1-2-201ENST00000516326 135 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNU7-43P-201ENST00000516554 64 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.88□□□□□ -2.27
COL4A4P53420 AC025521.1-201ENST00000621624 286 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 SNORD3E-202ENST00000627253 216 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNA5SP276-201ENST00000362580 94 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 MIR452-201ENST00000385020 85 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 RNU6-613P-201ENST00000410412 108 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 HSPE1P9-201ENST00000440046 311 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.88□□□□□ -2.27
COL4A4P53420 MIR4666B-201ENST00000578142 81 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 AL513534.2-201ENST00000603836 250 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 MIR3202-2-201ENST00000635980 79 ntBASIC0.88□□□□□ -2.27
COL4A4P53420 SNORA22.1-201ENST00000362701 134 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 SNORD114-2-201ENST00000363953 78 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 Y_RNA.437-201ENST00000384113 113 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 RNU6-296P-201ENST00000384608 107 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 MIR518A2-201ENST00000384966 87 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 MIR660-201ENST00000385235 97 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
COL4A4P53420 SNORD77B-201ENST00000391112 67 ntBASIC0.87□□□□□ -2.27
COL4A4P53420 RNU6-279P-201ENST00000391297 101 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 221.6 ms