Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-447P-201ENST00000410293 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-1118P-201ENST00000410382 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-1076P-201ENST00000410397 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-355P-201ENST00000410427 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-791P-201ENST00000410467 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-705P-201ENST00000410601 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-1100P-201ENST00000410691 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-860P-201ENST00000410860 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-1217P-201ENST00000411276 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-785P-201ENST00000411324 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 AC002350.1-201ENST00000490759 375 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU7-35P-201ENST00000517174 62 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 SNORA81.3-201ENST00000517283 198 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 U6.90-201ENST00000614007 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 U6.70-201ENST00000620287 104 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 MIR5087-201ENST00000635826 76 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNY1P13-201ENST00000365030 105 ntBASIC0.47□□□□□ -2.33
LIME1Q9H400 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
LIME1Q9H400 RNU6-765P-201ENST00000516916 99 ntBASIC0.47□□□□□ -2.33
LIME1Q9H400 AC018659.1-201ENST00000551083 169 ntBASIC0.47□□□□□ -2.33
LIME1Q9H400 Y_RNA.120-201ENST00000363304 110 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RNY1P11-201ENST00000363759 113 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 Y_RNA.470-201ENST00000384307 117 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RNU6-1237P-201ENST00000384777 107 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 SNORD93-201ENST00000408813 74 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RNU6-588P-201ENST00000410281 105 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RNU6-733P-201ENST00000410759 104 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RNU4-83P-201ENST00000410863 133 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 MTATP6P21-201ENST00000440681 189 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 Y_RNA.662-201ENST00000516028 97 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RN7SKP12-201ENST00000516275 143 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 RNU6-448P-201ENST00000517052 107 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 AC004792.1-201ENST00000614523 137 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 uc_338.17-201ENST00000619633 179 ntBASIC0.46□□□□□ -2.34
LIME1Q9H400 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.45□□□□□ -2.34
LIME1Q9H400 SNORD18A-201ENST00000363753 72 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 Y_RNA.272-201ENST00000364696 102 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 RNU6-690P-201ENST00000365242 106 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 SNORA36.2-201ENST00000384004 127 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 AL022718.1-201ENST00000412004 84 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 Y_RNA.651-201ENST00000459380 103 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 RNU4-54P-201ENST00000516428 129 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 MIR4305-201ENST00000583252 102 ntBASIC0.45□□□□□ -2.34
LIME1Q9H400 RNU7-113P-201ENST00000459273 62 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 RNU2-35P-201ENST00000516446 142 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 RNA5SP476-201ENST00000516613 103 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 MIR4491-201ENST00000581087 68 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 MIR4514-201ENST00000581410 57 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 MIR6082-201ENST00000613604 109 ntBASIC0.44□□□□□ -2.34
LIME1Q9H400 Y_RNA.13-201ENST00000362403 112 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
LIME1Q9H400 Y_RNA.580-201ENST00000391004 95 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 Y_RNA.584-201ENST00000391090 114 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 AL603914.1-201ENST00000401964 204 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 RPL39P25-201ENST00000449384 154 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 RNU7-197P-201ENST00000458836 62 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 AC074198.2-201ENST00000508153 258 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 RNA5SP395-201ENST00000516567 118 ntBASIC0.43□□□□□ -2.34
LIME1Q9H400 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.42□□□□□ -2.34
LIME1Q9H400 AL512326.2-201ENST00000426359 151 ntBASIC0.42□□□□□ -2.34
LIME1Q9H400 RNU7-79P-201ENST00000516082 62 ntBASIC0.42□□□□□ -2.34
LIME1Q9H400 RNU6-240P-201ENST00000516098 97 ntBASIC0.42□□□□□ -2.34
LIME1Q9H400 AC133485.4-201ENST00000561835 220 ntBASIC0.42□□□□□ -2.34
LIME1Q9H400 AC138907.4-201ENST00000570107 226 ntBASIC0.42□□□□□ -2.34
LIME1Q9H400 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.41□□□□□ -2.34
LIME1Q9H400 Y_RNA.531-201ENST00000384589 121 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 SNORD37.2-201ENST00000391075 66 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 PCNPP3-201ENST00000393579 471 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 RNU6-1194P-201ENST00000516208 104 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 Y_RNA.686-201ENST00000516548 134 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 RNA5SP94-201ENST00000516917 108 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 AC112693.2-201ENST00000556538 232 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 AC021443.1-201ENST00000604478 211 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 FTX_2.1-201ENST00000618816 94 ntBASIC0.41□□□□□ -2.34
LIME1Q9H400 RNU4-11P-201ENST00000365287 132 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 VTRNA1-3-201ENST00000365645 89 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 Y_RNA.617-201ENST00000410920 90 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.4□□□□□ -2.35
LIME1Q9H400 MIR1270-201ENST00000459320 83 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 RNA5SP33-201ENST00000516687 98 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 MIR548AE2-201ENST00000583456 67 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 Y_RNA.778-201ENST00000620203 90 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 uc_338.16-201ENST00000621804 95 ntBASIC0.4□□□□□ -2.35
LIME1Q9H400 RNU6-403P-201ENST00000363163 104 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 RNU6-508P-201ENST00000363231 103 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 RNU6-35P-201ENST00000384530 107 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 RNU6-394P-201ENST00000410735 107 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 SNORA68.3-201ENST00000515906 83 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 RNU7-123P-201ENST00000515911 60 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 Y_RNA.690-201ENST00000516603 95 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 RNU7-137P-201ENST00000516788 62 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.39□□□□□ -2.35
LIME1Q9H400 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.38□□□□□ -2.35
LIME1Q9H400 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.38□□□□□ -2.35
LIME1Q9H400 Y_RNA.32-201ENST00000362589 110 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 199.1 ms