Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 RNA5SP94-201ENST00000516917 108 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 MTND5P34-201ENST00000568888 325 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 SNORA25.18-201ENST00000607153 114 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 AC078938.1-201ENST00000620993 318 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 MIR3658-201ENST00000636291 56 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.233-201ENST00000364407 101 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP144-201ENST00000410846 116 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 RNU6-1086P-201ENST00000410930 100 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 RNU7-79P-201ENST00000516082 62 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP236-201ENST00000516169 116 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 MIR6082-201ENST00000613604 109 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 AC141273.2-201ENST00000618989 130 ntBASIC0.3□□□□□ -2.36
NKX2-6A6NCS4 MIR103A1-201ENST00000362165 78 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.297-201ENST00000364950 91 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 RNU6-949P-201ENST00000384040 107 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.567-201ENST00000384736 106 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.793-201ENST00000411222 111 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 RNU7-113P-201ENST00000459273 62 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP33-201ENST00000516687 98 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 RNU6-388P-201ENST00000517012 105 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 RNU6-389P-201ENST00000517048 105 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 RNU6-1271P-201ENST00000517049 105 ntBASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.29□□□□□ -2.36
NKX2-6A6NCS4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 MIRLET7D-201ENST00000362263 87 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU6-379P-201ENST00000363813 104 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU6-818P-201ENST00000364837 108 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU6-690P-201ENST00000365242 106 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.497-201ENST00000384447 98 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU5E-9P-201ENST00000411164 104 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.644-201ENST00000459006 113 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 AC107027.2-201ENST00000512197 115 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU6-240P-201ENST00000516098 97 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.674-201ENST00000516362 113 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU2-35P-201ENST00000516446 142 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 SNORA31.14-201ENST00000516728 116 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 RNU2-60P-201ENST00000517290 128 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 MIR6844-201ENST00000637122 62 ntBASIC0.28□□□□□ -2.36
NKX2-6A6NCS4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.120-201ENST00000363304 110 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 SNORA36.1-201ENST00000363424 132 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.188-201ENST00000363952 111 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 RNU4-67P-201ENST00000364569 141 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.435-201ENST00000384095 112 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.489-201ENST00000384410 101 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 AC023932.2-201ENST00000603176 175 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.27□□□□□ -2.37
NKX2-6A6NCS4 RNU6-312P-201ENST00000364629 107 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.337-201ENST00000365312 102 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 RNU6-291P-201ENST00000384720 107 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 MIR518A1-201ENST00000385068 85 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 RNA5SP63-201ENST00000391225 112 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 AL022718.1-201ENST00000412004 84 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 RNU6-531P-201ENST00000516694 104 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 RNU6-861P-201ENST00000516745 106 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.697-201ENST00000516776 113 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 DEFB131E-201ENST00000532329 154 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 MIR4305-201ENST00000583252 102 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 MIR548AE2-201ENST00000583456 67 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 AL359881.1-201ENST00000602916 267 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 AC105081.1-201ENST00000617727 106 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 uc_338.16-201ENST00000621804 95 ntBASIC0.26□□□□□ -2.37
NKX2-6A6NCS4 SNORD44.1-201ENST00000363202 61 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 RNA5SP133-201ENST00000363368 119 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 RNA5SP245-201ENST00000364239 121 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 RNU6-309P-201ENST00000364573 106 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.280-201ENST00000364765 112 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.357-201ENST00000365487 109 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 SNORA8.2-201ENST00000384372 139 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.515-201ENST00000384535 112 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 SNORD37.2-201ENST00000391075 66 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 SNORA40.8-201ENST00000411034 126 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 RNU5E-3P-201ENST00000515913 68 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.686-201ENST00000516548 134 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 SNORD67.1-201ENST00000516618 108 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 RNU7-35P-201ENST00000517174 62 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 AP002392.1-201ENST00000537692 208 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 U6.109-201ENST00000636749 87 ntBASIC0.25□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.366-201ENST00000365540 102 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.536-201ENST00000384621 113 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 RNU6-535P-201ENST00000384722 107 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 RNU6-239P-201ENST00000390990 99 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 SNORA75.5-201ENST00000391291 81 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 SUMO1P3-201ENST00000439961 304 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 SNRPGP12-201ENST00000449481 213 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 RNU6-893P-201ENST00000458841 100 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 MIR1270-201ENST00000459320 83 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 AC074198.2-201ENST00000508153 258 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 RNU6-138P-201ENST00000515952 107 ntBASIC0.24□□□□□ -2.37
NKX2-6A6NCS4 AC090625.1-201ENST00000357130 210 ntBASIC0.23□□□□□ -2.37
NKX2-6A6NCS4 SNORA63.5-201ENST00000363548 123 ntBASIC0.23□□□□□ -2.37
NKX2-6A6NCS4 SNORD118-201ENST00000363593 134 ntBASIC0.23□□□□□ -2.37
NKX2-6A6NCS4 RNU4-84P-201ENST00000364200 139 ntBASIC0.23□□□□□ -2.37
NKX2-6A6NCS4 Y_RNA.531-201ENST00000384589 121 ntBASIC0.23□□□□□ -2.37
NKX2-6A6NCS4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms