Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC022709.1-201ENST00000615967 87 ntBASIC1.21□□□□□ -2.22
NUP88Q99567 AP001340.1-201ENST00000624405 217 ntBASIC1.21□□□□□ -2.22
NUP88Q99567 RNU6-774P-201ENST00000363238 107 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 RNY1P5-201ENST00000383890 115 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 AC015818.7-201ENST00000428754 109 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 AC087499.7-201ENST00000441958 109 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 PDCD5P2-201ENST00000507570 312 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 RNA5SP33-201ENST00000516687 98 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.2□□□□□ -2.22
NUP88Q99567 U7.2-201ENST00000607576 63 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 AL137067.1-201ENST00000615933 120 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 MIR6515-201ENST00000619843 57 ntBASIC1.2□□□□□ -2.22
NUP88Q99567 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.2□□□□□ -2.22
NUP88Q99567 MIR3133-201ENST00000583157 78 ntBASIC1.19□□□□□ -2.22
NUP88Q99567 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.19□□□□□ -2.22
NUP88Q99567 AC023934.1-201ENST00000574529 2389 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 MIR18B-201ENST00000454574 71 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 OR2A41P-201ENST00000473586 105 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 RNU6-977P-201ENST00000516411 103 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 Y_RNA.703-201ENST00000516846 111 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 uc_338.6-201ENST00000613544 171 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 AL662814.1-201ENST00000617364 121 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 TUG1_4.1-201ENST00000619464 181 ntBASIC1.18□□□□□ -2.22
NUP88Q99567 MIR373-201ENST00000362273 69 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 Y_RNA.114-201ENST00000363265 113 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 RNU4-38P-201ENST00000364472 129 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 Y_RNA.294-201ENST00000364916 102 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 SNORA32-201ENST00000384072 121 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 MT-TF-201ENST00000387314 71 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 SNORA40-201ENST00000388090 126 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 MIR1257-201ENST00000408490 117 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 RPS26P5-201ENST00000418544 335 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 AL512326.2-201ENST00000426359 151 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 RNU7-123P-201ENST00000515911 60 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 RNU2-35P-201ENST00000516446 142 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 RNU6-1258P-201ENST00000516911 111 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 MIR3121-201ENST00000579680 77 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 AC108081.1-201ENST00000604358 221 ntBASIC1.17□□□□□ -2.22
NUP88Q99567 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
NUP88Q99567 RNU6-342P-201ENST00000384521 104 ntBASIC1.16□□□□□ -2.22
NUP88Q99567 Y_RNA.568-201ENST00000384742 113 ntBASIC1.16□□□□□ -2.22
NUP88Q99567 MIR548J-201ENST00000408833 112 ntBASIC1.16□□□□□ -2.22
NUP88Q99567 AC004812.1-201ENST00000540773 146 ntBASIC1.16□□□□□ -2.22
NUP88Q99567 MIR3973-201ENST00000579824 107 ntBASIC1.16□□□□□ -2.22
NUP88Q99567 MIR4661-201ENST00000582720 75 ntBASIC1.16□□□□□ -2.22
NUP88Q99567 RNU6-647P-201ENST00000364243 107 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 Y_RNA.298-201ENST00000364960 107 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 Y_RNA.470-201ENST00000384307 117 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 Y_RNA.531-201ENST00000384589 121 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 U7.7-201ENST00000459276 60 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 UBL5P1-201ENST00000507979 193 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 RNA5SP436-201ENST00000516020 115 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 MIR151B-201ENST00000584249 96 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 MIR6788-201ENST00000618842 66 ntBASIC1.15□□□□□ -2.23
NUP88Q99567 SNORD114-26-201ENST00000363543 72 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 MIR520F-201ENST00000384824 87 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 MIR563-201ENST00000385080 79 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 MIR1827-201ENST00000408549 66 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 RNU6-1086P-201ENST00000410930 100 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.14□□□□□ -2.23
NUP88Q99567 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.14□□□□□ -2.23
NUP88Q99567 RNY4P20-201ENST00000516678 93 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 AC141846.1-201ENST00000568348 142 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.14□□□□□ -2.23
NUP88Q99567 PVT1_3.1-201ENST00000620853 95 ntBASIC1.14□□□□□ -2.23
NUP88Q99567 MIR548M-201ENST00000408260 86 ntBASIC1.13□□□□□ -2.23
NUP88Q99567 SNORD93-201ENST00000408813 74 ntBASIC1.13□□□□□ -2.23
NUP88Q99567 MTND4LP9-201ENST00000427694 174 ntBASIC1.13□□□□□ -2.23
NUP88Q99567 RNA5SP255-201ENST00000516370 107 ntBASIC1.13□□□□□ -2.23
NUP88Q99567 RNU6-1110P-201ENST00000516462 101 ntBASIC1.13□□□□□ -2.23
NUP88Q99567 RNU6-1223P-201ENST00000517124 104 ntBASIC1.13□□□□□ -2.23
NUP88Q99567 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
NUP88Q99567 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
NUP88Q99567 MIR30D-201ENST00000362283 70 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 RNU6-746P-201ENST00000384112 109 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 RNU6-364P-201ENST00000384387 107 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 RNU6-257P-201ENST00000410238 98 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.12□□□□□ -2.23
NUP88Q99567 RNU6-1211P-201ENST00000459179 105 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 RNU7-185P-201ENST00000459215 60 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 MIR4676-201ENST00000583078 72 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 MIR548AE2-201ENST00000583456 67 ntBASIC1.12□□□□□ -2.23
NUP88Q99567 AL391516.1-201ENST00000554380 2449 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 RNU6-235P-201ENST00000362644 107 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 MIR1263-201ENST00000408324 86 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 RNU6-1061P-201ENST00000516530 99 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 MIR4698-201ENST00000577795 80 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 AC025627.3-201ENST00000582078 182 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 AC103810.9-201ENST00000606688 112 ntBASIC1.11□□□□□ -2.23
NUP88Q99567 Y_RNA.299-201ENST00000364973 94 ntBASIC1.1□□□□□ -2.23
NUP88Q99567 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.1□□□□□ -2.23
NUP88Q99567 RN7SKP19-201ENST00000516016 252 ntBASIC1.1□□□□□ -2.23
NUP88Q99567 RNU7-79P-201ENST00000516082 62 ntBASIC1.1□□□□□ -2.23
NUP88Q99567 AC020891.4-201ENST00000605745 93 ntBASIC1.1□□□□□ -2.23
NUP88Q99567 AL589743.1-201ENST00000551932 2712 ntBASIC1.1□□□□□ -2.23
NUP88Q99567 SNORD115-2-201ENST00000362842 82 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 239.5 ms