Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SNORD109A-201ENST00000459128 67 ntBASIC2.55□□□□□ -2
RNFT1Q5M7Z0 snoU13.27-201ENST00000459278 104 ntBASIC2.55□□□□□ -2
RNFT1Q5M7Z0 RNU7-106P-201ENST00000459514 67 ntBASIC2.55□□□□□ -2
RNFT1Q5M7Z0 RN7SL499P-201ENST00000481141 276 ntBASIC2.55□□□□□ -2
RNFT1Q5M7Z0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.55□□□□□ -2
RNFT1Q5M7Z0 AL161722.3-201ENST00000605789 2983 ntBASIC2.55□□□□□ -2
RNFT1Q5M7Z0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
RNFT1Q5M7Z0 RNA5SP126-201ENST00000365092 109 ntBASIC2.54□□□□□ -2
RNFT1Q5M7Z0 MIR633-201ENST00000384821 98 ntBASIC2.54□□□□□ -2
RNFT1Q5M7Z0 MIR588-201ENST00000384900 83 ntBASIC2.54□□□□□ -2
RNFT1Q5M7Z0 AC244023.1-201ENST00000426884 112 ntBASIC2.54□□□□□ -2
RNFT1Q5M7Z0 AC242498.1-201ENST00000604134 111 ntBASIC2.54□□□□□ -2
RNFT1Q5M7Z0 AC009487.2-201ENST00000420969 6821 ntBASIC2.54□□□□□ -2
RNFT1Q5M7Z0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
RNFT1Q5M7Z0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.53□□□□□ -2
RNFT1Q5M7Z0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
RNFT1Q5M7Z0 RNU6-1216P-201ENST00000362590 107 ntBASIC2.53□□□□□ -2
RNFT1Q5M7Z0 MIR597-201ENST00000384968 97 ntBASIC2.53□□□□□ -2
RNFT1Q5M7Z0 RNU6-1194P-201ENST00000516208 104 ntBASIC2.53□□□□□ -2
RNFT1Q5M7Z0 RNU6-977P-201ENST00000516411 103 ntBASIC2.53□□□□□ -2
RNFT1Q5M7Z0 SNORD115-22-201ENST00000364456 82 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 SNORD116-24-201ENST00000384549 92 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 SNORA67.4-201ENST00000384688 142 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 SNORD63B-201ENST00000411005 70 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 HMGN2P35-201ENST00000412164 270 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 AC009474.2-201ENST00000451383 136 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 UQCRHP3-201ENST00000451503 251 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 RNA5SP445-201ENST00000515889 115 ntBASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
RNFT1Q5M7Z0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 RNU11-3P-201ENST00000391111 133 ntBASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 RPS27P16-201ENST00000425758 201 ntBASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 RN7SL75P-201ENST00000461926 281 ntBASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 SUB1P4-201ENST00000566062 339 ntBASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 U4.3-201ENST00000621047 82 ntBASIC2.51□□□□□ -2.01
RNFT1Q5M7Z0 MIR337-201ENST00000362281 93 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 MIR30D-201ENST00000362283 70 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 SNORD45.1-201ENST00000363181 77 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 Y_RNA.239-201ENST00000364444 113 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RNU6-301P-201ENST00000384277 107 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 MIR512-1-201ENST00000384913 84 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 MIR9-1-201ENST00000385198 89 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 SNORA48.1-201ENST00000390879 135 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RNA5SP21-201ENST00000410917 96 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 SUMO1P4-201ENST00000429430 302 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RN7SL429P-201ENST00000479090 223 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RN7SL489P-201ENST00000486185 223 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RN7SL327P-201ENST00000488659 223 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RNU7-41P-201ENST00000515917 61 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RNVU1-2-201ENST00000516326 135 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 AC022202.1-201ENST00000613515 211 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 RN7SL853P-201ENST00000617250 223 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 AC069503.3-201ENST00000618674 145 ntBASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
RNFT1Q5M7Z0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 RNU6-112P-201ENST00000363599 104 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 RNA5SP48-201ENST00000363969 126 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 MIR196B-201ENST00000384852 84 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 MIR1283-2-201ENST00000408621 87 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 MIR2113-201ENST00000459007 91 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 MIR4658-201ENST00000584344 65 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 U6.81-201ENST00000612550 106 ntBASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.49□□□□□ -2.01
RNFT1Q5M7Z0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 RNU6-859P-201ENST00000362728 107 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 SNORD113.1-201ENST00000363280 73 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 MIR519A1-201ENST00000385257 85 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 RNA5SP465-201ENST00000391195 109 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 AC003982.1-202ENST00000469928 248 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 AC097510.1-201ENST00000510945 133 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 RNU2-19P-201ENST00000517288 84 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 PRELID3BP2-201ENST00000605362 201 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.48□□□□□ -2.01
RNFT1Q5M7Z0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 RNU4-58P-201ENST00000363192 141 ntBASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 RNA5SP137-201ENST00000516833 135 ntBASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 MIR4446-201ENST00000578505 67 ntBASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 MIR6740-201ENST00000618268 113 ntBASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
RNFT1Q5M7Z0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 RNU6-53P-201ENST00000365367 106 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 RNU1-52P-201ENST00000384190 164 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 MIR653-201ENST00000385279 96 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 MT-TF-201ENST00000387314 71 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 RNU6-1165P-201ENST00000410119 107 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 RNU6-322P-201ENST00000516010 103 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 RNU11-2P-201ENST00000516898 142 ntBASIC2.46□□□□□ -2.02
RNFT1Q5M7Z0 MIR4264-201ENST00000583520 66 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 486.6 ms