Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 AC141557.1-201ENST00000540982 400 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 MIR5190-201ENST00000581537 80 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 MIR4290-201ENST00000583807 95 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 MIR2909-201ENST00000617113 69 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.61-201ENST00000362835 102 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 RNU4-17P-201ENST00000365598 141 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 MIR610-201ENST00000385139 96 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 AL117351.2-201ENST00000513571 157 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 SNORD116-25-201ENST00000516517 92 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 AC244669.1-204ENST00000621564 178 ntBASIC-0.08□□□□□ -2.42
CCDC40Q4G0X9 RNU4-16P-201ENST00000364737 141 ntBASIC-0.09□□□□□ -2.42
CCDC40Q4G0X9 RNU6-127P-201ENST00000390897 107 ntBASIC-0.09□□□□□ -2.42
CCDC40Q4G0X9 RNU6-1109P-201ENST00000391187 107 ntBASIC-0.09□□□□□ -2.42
CCDC40Q4G0X9 SCARNA15-202ENST00000516881 127 ntBASIC-0.09□□□□□ -2.42
CCDC40Q4G0X9 AP003072.1-201ENST00000531740 145 ntBASIC-0.09□□□□□ -2.42
CCDC40Q4G0X9 MIR4743-201ENST00000584576 69 ntBASIC-0.09□□□□□ -2.42
CCDC40Q4G0X9 SNORD114-5-201ENST00000362928 70 ntBASIC-0.1□□□□□ -2.43
CCDC40Q4G0X9 RNU6-713P-201ENST00000384761 107 ntBASIC-0.1□□□□□ -2.43
CCDC40Q4G0X9 MIR760-201ENST00000390220 80 ntBASIC-0.1□□□□□ -2.43
CCDC40Q4G0X9 RNU7-129P-201ENST00000516128 62 ntBASIC-0.1□□□□□ -2.43
CCDC40Q4G0X9 RNU6-978P-201ENST00000364371 103 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 RNA5SP128-201ENST00000365305 116 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 SNORA33.2-201ENST00000365413 134 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 MIR378D2-201ENST00000580636 98 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 AL109933.3-201ENST00000619095 188 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 U6.104-201ENST00000637979 90 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 MTND5P32-201ENST00000560711 1802 ntBASIC-0.11□□□□□ -2.43
CCDC40Q4G0X9 Y_RNA.262-201ENST00000364641 102 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 SNORA2A-201ENST00000383885 135 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 Y_RNA.512-201ENST00000384518 102 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 MIR624-201ENST00000385217 97 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 RNA5SP127-201ENST00000411051 133 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 AL121914.1-201ENST00000450188 156 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 RNU7-79P-201ENST00000516082 62 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 AP001094.1-201ENST00000579805 193 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 MIR4744-201ENST00000581563 82 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 AL356055.1-201ENST00000602528 446 ntBASIC-0.12□□□□□ -2.43
CCDC40Q4G0X9 RNU4-58P-201ENST00000363192 141 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 RNA5SP245-201ENST00000364239 121 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 MIR643-201ENST00000385267 97 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 MIR892B-201ENST00000401279 77 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 RNU6-531P-201ENST00000516694 104 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 DEFB131E-201ENST00000532329 154 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 MIR4752-201ENST00000579672 72 ntBASIC-0.13□□□□□ -2.43
CCDC40Q4G0X9 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.14□□□□□ -2.43
CCDC40Q4G0X9 RNU6-639P-201ENST00000384074 107 ntBASIC-0.14□□□□□ -2.43
CCDC40Q4G0X9 RNA5SP325-201ENST00000363756 130 ntBASIC-0.15□□□□□ -2.43
CCDC40Q4G0X9 MIR145-201ENST00000384967 88 ntBASIC-0.15□□□□□ -2.43
CCDC40Q4G0X9 RNU6-782P-201ENST00000516852 104 ntBASIC-0.15□□□□□ -2.43
CCDC40Q4G0X9 RNU7-35P-201ENST00000517174 62 ntBASIC-0.15□□□□□ -2.43
CCDC40Q4G0X9 SNORA63.5-201ENST00000363548 123 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 RNU6-867P-201ENST00000364956 107 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.483-201ENST00000384380 101 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.518-201ENST00000384552 113 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 RNU4-70P-201ENST00000384579 139 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 MT-TW-201ENST00000387382 68 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 MIR1302-6-201ENST00000408466 90 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 RPL39P34-201ENST00000477141 156 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 MIR4643-201ENST00000577473 78 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 RNU1-29P-201ENST00000606574 126 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 MIR499B-201ENST00000636498 73 ntBASIC-0.16□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 SNORD115-2-201ENST00000362842 82 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 RNA5SP133-201ENST00000363368 119 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 SNORD115-20-201ENST00000365099 82 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 RNU6-578P-201ENST00000390980 103 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 MTCYBP6-201ENST00000441810 138 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 RNU6-635P-201ENST00000516651 102 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 AC011921.3-201ENST00000605540 361 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 AC067863.3-201ENST00000624172 122 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 MIR1295B-201ENST00000636144 60 ntBASIC-0.17□□□□□ -2.44
CCDC40Q4G0X9 MIR101-2-201ENST00000362195 79 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.85-201ENST00000363014 111 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 RNU6-652P-201ENST00000365488 107 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 RNY1P6-201ENST00000384193 109 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 MIR593-201ENST00000384856 100 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 RNA5SP144-201ENST00000410846 116 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 AC244505.6-201ENST00000452829 130 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 AL360085.1-201ENST00000604713 532 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 MIR8062-201ENST00000621515 85 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 U6.109-201ENST00000636749 87 ntBASIC-0.18□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.19□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.19□□□□□ -2.44
CCDC40Q4G0X9 RNA5SP457-201ENST00000363657 124 ntBASIC-0.19□□□□□ -2.44
CCDC40Q4G0X9 RNU6-302P-201ENST00000365249 107 ntBASIC-0.19□□□□□ -2.44
CCDC40Q4G0X9 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.19□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms