Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 U7.7-201ENST00000459276 60 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 AL136317.1-201ENST00000612653 226 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 MIR6841-201ENST00000637129 72 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 AC023934.1-201ENST00000574529 2389 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.86□□□□□ -2.27
HOXC9P31274 RNU6-1187P-201ENST00000364771 110 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 SNORD18B-201ENST00000365659 72 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 Y_RNA.430-201ENST00000384081 110 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 PCNPP3-201ENST00000393579 471 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 RNU5E-3P-201ENST00000515913 68 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 RNU6-977P-201ENST00000516411 103 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 RNU6-1110P-201ENST00000516462 101 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 RNU2-60P-201ENST00000517290 128 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 MIR4711-201ENST00000578274 70 ntBASIC0.85□□□□□ -2.27
HOXC9P31274 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
HOXC9P31274 RNU6-349P-201ENST00000362402 107 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 RNU6-508P-201ENST00000363231 103 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 RNU6-886P-201ENST00000384319 105 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 MIR520F-201ENST00000384824 87 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 MIR605-201ENST00000385078 83 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 SNORD99-201ENST00000408612 74 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 RNU2-64P-201ENST00000411315 191 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 RPL39P25-201ENST00000449384 154 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 RNU6-240P-201ENST00000516098 97 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 Y_RNA.686-201ENST00000516548 134 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 AC098479.1-201ENST00000609225 154 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 Y_RNA.778-201ENST00000620203 90 ntBASIC0.84□□□□□ -2.27
HOXC9P31274 RNU6-369P-201ENST00000362515 102 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 Y_RNA.171-201ENST00000363760 102 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 Y_RNA.398-201ENST00000383952 99 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 Y_RNA.690-201ENST00000516603 95 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 AC025627.3-201ENST00000582078 182 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 MIR3668-201ENST00000582138 75 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 AC020891.4-201ENST00000605745 93 ntBASIC0.83□□□□□ -2.28
HOXC9P31274 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
HOXC9P31274 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.83□□□□□ -2.28
HOXC9P31274 SNORA18-201ENST00000384416 132 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 MIR563-201ENST00000385080 79 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 SNORD105-201ENST00000386910 85 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 MIR1257-201ENST00000408490 117 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 RNU6-394P-201ENST00000410735 107 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 RNA5SP144-201ENST00000410846 116 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 AC098934.3-201ENST00000430450 190 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 MIR18B-201ENST00000454574 71 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 RPL39P28-201ENST00000465655 155 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 SNORA25.12-201ENST00000516202 82 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 Y_RNA.757-201ENST00000578934 114 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 MIR3144-201ENST00000579460 79 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 MIR4676-201ENST00000583078 72 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 AL662814.1-201ENST00000617364 121 ntBASIC0.82□□□□□ -2.28
HOXC9P31274 MIR30D-201ENST00000362283 70 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNA5SP347-201ENST00000362445 119 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 Y_RNA.251-201ENST00000364551 99 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNU6-309P-201ENST00000364573 106 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 MIR520H-201ENST00000385126 88 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNU6-460P-201ENST00000391158 108 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 MIR513C-201ENST00000401352 84 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 AL022718.1-201ENST00000412004 84 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 AC092628.1-201ENST00000436250 252 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNU6-893P-201ENST00000458841 100 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNU7-185P-201ENST00000459215 60 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNU7-113P-201ENST00000459273 62 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 RNU6-1258P-201ENST00000516911 111 ntBASIC0.81□□□□□ -2.28
HOXC9P31274 MIR608-201ENST00000384820 100 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 MT-TF-201ENST00000387314 71 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.8□□□□□ -2.28
HOXC9P31274 PSMC1P5-201ENST00000512850 177 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 AC133485.4-201ENST00000561835 220 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 AC138907.4-201ENST00000570107 226 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 AC011195.1-201ENST00000578177 177 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 AL353765.1-201ENST00000605514 183 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.8□□□□□ -2.28
HOXC9P31274 Y_RNA.120-201ENST00000363304 110 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
HOXC9P31274 Y_RNA.555-201ENST00000384673 110 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 Y_RNA.580-201ENST00000391004 95 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 MTND5P41-201ENST00000517498 206 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 MIR4804-201ENST00000581683 73 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 MIR4305-201ENST00000583252 102 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 AC021443.1-201ENST00000604478 211 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 AC011603.4-201ENST00000611325 277 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 AC021753.1-201ENST00000635724 168 ntBASIC0.79□□□□□ -2.28
HOXC9P31274 SNORA32-201ENST00000384072 121 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 Y_RNA.470-201ENST00000384307 117 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 RNU6-364P-201ENST00000384387 107 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 MIR938-201ENST00000401216 83 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 SNORD93-201ENST00000408813 74 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 RNU7-197P-201ENST00000458836 62 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 Y_RNA.651-201ENST00000459380 103 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 AC141846.1-201ENST00000568348 142 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.78□□□□□ -2.28
HOXC9P31274 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
HOXC9P31274 AL589743.1-201ENST00000551932 2712 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 SNORD114-23-201ENST00000363536 72 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 RNU6-915P-201ENST00000364943 103 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 MIR125B2-201ENST00000385128 89 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 AL512326.2-201ENST00000426359 151 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 RNU7-164P-201ENST00000459221 62 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 339 ms