Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MT-TI-201ENST00000387365 69 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
SMARCA1P28370 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.37□□□□□ -2.19
SMARCA1P28370 AC113410.1-201ENST00000505029 247 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 RNU6-1333P-201ENST00000516162 93 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 AC036111.3-201ENST00000526389 112 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 AP000753.3-201ENST00000604083 169 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 MIR6740-201ENST00000618268 113 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 AC027335.2-201ENST00000624030 375 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 AC008163.1-202ENST00000636004 2889 ntBASIC1.36□□□□□ -2.19
SMARCA1P28370 RNU6-580P-201ENST00000365159 107 ntBASIC1.36□□□□□ -2.19
SMARCA1P28370 RNU6-342P-201ENST00000384521 104 ntBASIC1.36□□□□□ -2.19
SMARCA1P28370 RNU6-1117P-201ENST00000384525 104 ntBASIC1.36□□□□□ -2.19
SMARCA1P28370 snoU13.2-201ENST00000459201 104 ntBASIC1.36□□□□□ -2.19
SMARCA1P28370 Y_RNA.712-201ENST00000517011 92 ntBASIC1.36□□□□□ -2.19
SMARCA1P28370 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SMARCA1P28370 RNU6-22P-201ENST00000384355 107 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 SNORD12-201ENST00000391002 90 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 RNA5SP136-201ENST00000410906 107 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 AC002429.1-201ENST00000437672 148 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 AC023827.1-201ENST00000569247 97 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 AC025166.1-201ENST00000612411 163 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 uc_338.6-201ENST00000613544 171 ntBASIC1.35□□□□□ -2.19
SMARCA1P28370 MIR377-201ENST00000362145 69 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 Y_RNA.168-201ENST00000363740 102 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 RNU6-53P-201ENST00000365367 106 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 Y_RNA.528-201ENST00000384575 108 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 RNU6-1237P-201ENST00000384777 107 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 MIR222-201ENST00000384992 110 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 RNU7-90P-201ENST00000459216 62 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 RNA5SP33-201ENST00000516687 98 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 RMST_2.1-201ENST00000617263 136 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 U2.22-201ENST00000636441 106 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 MIR3914-2-201ENST00000637339 95 ntBASIC1.34□□□□□ -2.19
SMARCA1P28370 MTND5P18-201ENST00000445624 1801 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 SNORD113.3-201ENST00000364630 78 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 SNORA18-201ENST00000384416 132 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 SNORA2B-201ENST00000384583 137 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 MIR563-201ENST00000385080 79 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RPS23P4-201ENST00000487908 423 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RN7SKP179-201ENST00000516126 217 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RNU7-40P-201ENST00000516397 64 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RNA5SP102-201ENST00000516865 106 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RNA5SP404-201ENST00000517118 132 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 MIR548AE2-201ENST00000583456 67 ntBASIC1.33□□□□□ -2.2
SMARCA1P28370 RNU6-1168P-201ENST00000390831 104 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 MRPL35P3-201ENST00000421557 364 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 AC008267.6-201ENST00000441664 139 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 RNU7-62P-201ENST00000458856 62 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 MIR1270-201ENST00000459320 83 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 snoU13.21-201ENST00000459368 105 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 RNU6-62P-201ENST00000516526 102 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.32□□□□□ -2.2
SMARCA1P28370 AC106800.4-201ENST00000614905 153 ntBASIC1.32□□□□□ -2.2
SMARCA1P28370 RNU1-124P-201ENST00000363861 145 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 Y_RNA.198-201ENST00000364013 98 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 SNORA32-201ENST00000384072 121 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 SNORA22C-201ENST00000384614 134 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 RNU6-1165P-201ENST00000410119 107 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 AC063976.4-201ENST00000421971 163 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 COX6CP6-201ENST00000490840 228 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.31□□□□□ -2.2
SMARCA1P28370 MIR30D-201ENST00000362283 70 ntBASIC1.3□□□□□ -2.2
SMARCA1P28370 RNU6-735P-201ENST00000410612 107 ntBASIC1.3□□□□□ -2.2
SMARCA1P28370 AC141846.1-201ENST00000568348 142 ntBASIC1.3□□□□□ -2.2
SMARCA1P28370 RNU6-94P-201ENST00000607728 107 ntBASIC1.3□□□□□ -2.2
SMARCA1P28370 MIR6515-201ENST00000619843 57 ntBASIC1.3□□□□□ -2.2
SMARCA1P28370 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
SMARCA1P28370 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SMARCA1P28370 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SMARCA1P28370 Y_RNA.36-201ENST00000362602 112 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 Y_RNA.563-201ENST00000384707 108 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 MIR19B1-201ENST00000384829 87 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 RNU6-1154P-201ENST00000391001 104 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 SNORD111-201ENST00000408139 94 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 RNU4-69P-201ENST00000410677 143 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 RNU7-79P-201ENST00000516082 62 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 RNU6-479P-201ENST00000516348 105 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 RNU7-35P-201ENST00000517174 62 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 AL662814.1-201ENST00000617364 121 ntBASIC1.29□□□□□ -2.2
SMARCA1P28370 RNA5SP325-201ENST00000363756 130 ntBASIC1.28□□□□□ -2.2
SMARCA1P28370 Y_RNA.346-201ENST00000365385 112 ntBASIC1.28□□□□□ -2.2
SMARCA1P28370 SNORD114-22-201ENST00000365423 72 ntBASIC1.28□□□□□ -2.2
SMARCA1P28370 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.28□□□□□ -2.2
SMARCA1P28370 RNA5SP237-201ENST00000410414 113 ntBASIC1.28□□□□□ -2.2
SMARCA1P28370 AC012676.2-201ENST00000619258 186 ntBASIC1.28□□□□□ -2.2
SMARCA1P28370 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SMARCA1P28370 SNORD114-26-201ENST00000363543 72 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 RNA5SP205-201ENST00000364653 136 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 Y_RNA.299-201ENST00000364973 94 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 Y_RNA.353-201ENST00000365440 108 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 SNORD83.1-201ENST00000411362 77 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 SNORD33.1-201ENST00000516213 88 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 RNU7-6P-201ENST00000516845 62 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 AC087741.2-201ENST00000619415 172 ntBASIC1.27□□□□□ -2.21
SMARCA1P28370 Y_RNA.213-201ENST00000364178 111 ntBASIC1.26□□□□□ -2.21
SMARCA1P28370 RNY1P13-201ENST00000365030 105 ntBASIC1.26□□□□□ -2.21
SMARCA1P28370 RNU6-1086P-201ENST00000410930 100 ntBASIC1.26□□□□□ -2.21
SMARCA1P28370 RPS29P28-201ENST00000446439 141 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms