Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU7-123P-201ENST00000515911 60 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 Y_RNA.757-201ENST00000578934 114 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 MIR6734-201ENST00000621166 68 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
HOXC4P09017 SNORA22.1-201ENST00000362701 134 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 Y_RNA.71-201ENST00000362892 104 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 Y_RNA.261-201ENST00000364631 102 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 Y_RNA.330-201ENST00000365230 109 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 Y_RNA.470-201ENST00000384307 117 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 RNU6-1104P-201ENST00000384723 104 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 MT-TI-201ENST00000387365 69 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 RNU6-205P-201ENST00000390858 107 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 RN7SKP19-201ENST00000516016 252 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 SNORD79.1-201ENST00000516069 84 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 AC022523.2-201ENST00000561045 150 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 AL137067.1-201ENST00000615933 120 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 TUG1_4.1-201ENST00000619464 181 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 MIR6835-201ENST00000621552 64 ntBASIC0.73□□□□□ -2.29
HOXC4P09017 AC008163.1-202ENST00000636004 2889 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 RNU6-342P-201ENST00000384521 104 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 RNU6-959P-201ENST00000384671 107 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 MIR1263-201ENST00000408324 86 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 Y_RNA.617-201ENST00000410920 90 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 RPS3AP1-201ENST00000413190 320 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AC002429.1-201ENST00000437672 148 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 TMSB4XP3-201ENST00000445144 114 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 RNU7-164P-201ENST00000459221 62 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 MIR1270-201ENST00000459320 83 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 snoU13.21-201ENST00000459368 105 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 RNY4P20-201ENST00000516678 93 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.72□□□□□ -2.29
HOXC4P09017 AC133485.4-201ENST00000561835 220 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AC023827.1-201ENST00000569247 97 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AC138907.4-201ENST00000570107 226 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.72□□□□□ -2.29
HOXC4P09017 MIR4305-201ENST00000583252 102 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 MIR4653-201ENST00000585107 83 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AC021443.1-201ENST00000604478 211 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 AL365222.1-201ENST00000614661 98 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 MIR6740-201ENST00000618268 113 ntBASIC0.72□□□□□ -2.29
HOXC4P09017 Y_RNA.298-201ENST00000364960 107 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 RNU6-396P-201ENST00000365369 105 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 Y_RNA.430-201ENST00000384081 110 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 SNORA80D-201ENST00000384488 135 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 SNORD38B-201ENST00000384690 67 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 RNU6-1237P-201ENST00000384777 107 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 RNU7-21P-201ENST00000459430 62 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 PDCD5P2-201ENST00000507570 312 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 RNU6-772P-201ENST00000516042 105 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 RNU6-406P-201ENST00000516470 107 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 AC036111.3-201ENST00000526389 112 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 AC004812.1-201ENST00000540773 146 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 SEPT14P17-201ENST00000617978 177 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 SNORD38B-202ENST00000625943 69 ntBASIC0.71□□□□□ -2.3
HOXC4P09017 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
HOXC4P09017 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
HOXC4P09017 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 RNU6-647P-201ENST00000364243 107 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 SNORD58C-201ENST00000365223 64 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 SNORA19-201ENST00000384737 128 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 RNU6-613P-201ENST00000410412 108 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 RNU6-735P-201ENST00000410612 107 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 AC015818.7-201ENST00000428754 109 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 AC087499.7-201ENST00000441958 109 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.7□□□□□ -2.3
HOXC4P09017 SNORD124-201ENST00000459577 104 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 RNU6-659P-201ENST00000516454 104 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 RNU6-1061P-201ENST00000516530 99 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 AC133485.1-201ENST00000567176 124 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 AC138907.6-201ENST00000568401 126 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 MIR3152-201ENST00000579801 74 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 U2.22-201ENST00000636441 106 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 AC132825.6-201ENST00000638861 357 ntBASIC0.7□□□□□ -2.3
HOXC4P09017 MIR539-201ENST00000365690 78 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 RNU6-80P-201ENST00000384195 107 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 SNORA2B-201ENST00000384583 137 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 Y_RNA.531-201ENST00000384589 121 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 MIR588-201ENST00000384900 83 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 MIR489-201ENST00000384923 84 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 MIRLET7F2-201ENST00000385277 83 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 AL022718.1-201ENST00000412004 84 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 AL606753.1-201ENST00000427435 87 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 AC113410.1-201ENST00000505029 247 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 RNU6-1333P-201ENST00000516162 93 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 MIR2115-201ENST00000516657 100 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 RNA5SP33-201ENST00000516687 98 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 RNU11-2P-201ENST00000516898 142 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 RNU6-94P-201ENST00000607728 107 ntBASIC0.69□□□□□ -2.3
HOXC4P09017 Y_RNA.127-201ENST00000363386 109 ntBASIC0.68□□□□□ -2.3
HOXC4P09017 RNU6-580P-201ENST00000365159 107 ntBASIC0.68□□□□□ -2.3
HOXC4P09017 SNORD113-1-201ENST00000365321 69 ntBASIC0.68□□□□□ -2.3
HOXC4P09017 SNORD116-14-201ENST00000383894 92 ntBASIC0.68□□□□□ -2.3
HOXC4P09017 SNORD116-17-201ENST00000383929 92 ntBASIC0.68□□□□□ -2.3
HOXC4P09017 SNORA32-201ENST00000384072 121 ntBASIC0.68□□□□□ -2.3
HOXC4P09017 SNORA18-201ENST00000384416 132 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 210.7 ms