Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL022718.1-201ENST00000412004 84 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.17□□□□□ -2.22
LMX1BO60663 RPS3AP1-201ENST00000413190 320 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 AL133373.1-201ENST00000497098 94 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 MIR4679-2-201ENST00000578358 77 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 MIR548AE2-201ENST00000583456 67 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 RNA5SP48-201ENST00000363969 126 ntBASIC1.16□□□□□ -2.22
LMX1BO60663 Y_RNA.362-201ENST00000365518 110 ntBASIC1.16□□□□□ -2.22
LMX1BO60663 SNORD12C-201ENST00000386307 89 ntBASIC1.16□□□□□ -2.22
LMX1BO60663 RPS29P23-201ENST00000458635 123 ntBASIC1.16□□□□□ -2.22
LMX1BO60663 Y_RNA.773-201ENST00000607168 90 ntBASIC1.16□□□□□ -2.22
LMX1BO60663 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.16□□□□□ -2.22
LMX1BO60663 SNORD33-201ENST00000362761 85 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNU6-755P-201ENST00000364400 103 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNU6-53P-201ENST00000365367 106 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNU6-342P-201ENST00000384521 104 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNU6-880P-201ENST00000384526 107 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNA5SP261-201ENST00000410536 106 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNU7-113P-201ENST00000459273 62 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 RNU6-947P-201ENST00000516264 106 ntBASIC1.15□□□□□ -2.23
LMX1BO60663 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.15□□□□□ -2.23
LMX1BO60663 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
LMX1BO60663 SNORA63.4-201ENST00000362763 126 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 Y_RNA.85-201ENST00000363014 111 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 SNORD115-19-201ENST00000363098 82 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 RNA5SP264-201ENST00000363115 107 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 SNORD115-18-201ENST00000363293 82 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 RNY4P6-201ENST00000363667 96 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 Y_RNA.213-201ENST00000364178 111 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 SNORD115-17-201ENST00000364612 82 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 SNORD114-22-201ENST00000365423 72 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 MIR548D2-201ENST00000384955 97 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 MIR758-201ENST00000390227 88 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
LMX1BO60663 RNU4-69P-201ENST00000410677 143 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 RNU6-1054P-201ENST00000411293 104 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 RNU6-893P-201ENST00000458841 100 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 RNU6-902P-201ENST00000517212 91 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 MIR3937-201ENST00000580135 106 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 MIR6516-201ENST00000630554 81 ntBASIC1.14□□□□□ -2.23
LMX1BO60663 Y_RNA.363-201ENST00000365529 113 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 SNORA22-201ENST00000383907 134 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 AL353813.1-201ENST00000440700 253 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 RPL30P7-201ENST00000479312 323 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 AC004223.1-201ENST00000479840 271 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 RNA5SP33-201ENST00000516687 98 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 RNU7-6P-201ENST00000516845 62 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 MIR3163-201ENST00000581592 73 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 MIR4422-201ENST00000581938 83 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 RMST_2.1-201ENST00000617263 136 ntBASIC1.13□□□□□ -2.23
LMX1BO60663 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
LMX1BO60663 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
LMX1BO60663 RNU6-106P-201ENST00000384405 107 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 RNU6-1065P-201ENST00000384513 106 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 MIR150-201ENST00000385048 84 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 AC048334.1-201ENST00000477975 159 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 PDCD5P2-201ENST00000507570 312 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 RNU7-35P-201ENST00000517174 62 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 CYP3A52P-201ENST00000563326 91 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 RNU6-94P-201ENST00000607728 107 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 uc_338.6-201ENST00000613544 171 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 MIR1255B1-201ENST00000636325 63 ntBASIC1.12□□□□□ -2.23
LMX1BO60663 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.12□□□□□ -2.23
LMX1BO60663 RNU6-654P-201ENST00000364373 107 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 RNU6-153P-201ENST00000364422 104 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 RNU6-1107P-201ENST00000364817 104 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 SNORD38B-201ENST00000384690 67 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 MIR563-201ENST00000385080 79 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 AC245047.7-201ENST00000440265 293 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 MIR6740-201ENST00000618268 113 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 SNORD38B-202ENST00000625943 69 ntBASIC1.11□□□□□ -2.23
LMX1BO60663 SNORA63.5-201ENST00000363548 123 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 U8.6-201ENST00000364939 135 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 Y_RNA.299-201ENST00000364973 94 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 Y_RNA.323-201ENST00000365157 109 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 SNORA32-201ENST00000384072 121 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RNU6-616P-201ENST00000384353 107 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 SNORA18-201ENST00000384416 132 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RNU6-1307P-201ENST00000391012 103 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RNU6-554P-201ENST00000410466 106 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RPL39P39-201ENST00000455840 151 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.1□□□□□ -2.23
LMX1BO60663 snoU13.2-201ENST00000459201 104 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RPL39P34-201ENST00000477141 156 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RNU11-2P-201ENST00000516898 142 ntBASIC1.1□□□□□ -2.23
LMX1BO60663 RNU6-580P-201ENST00000365159 107 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 RNU6-396P-201ENST00000365369 105 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 Y_RNA.354-201ENST00000365448 111 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 MIR759-201ENST00000390224 91 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 RNA5SP95-201ENST00000410319 137 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 RNU6-613P-201ENST00000410412 108 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 AC068339.1-201ENST00000526965 141 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 MIR5009-201ENST00000578736 100 ntBASIC1.09□□□□□ -2.23
LMX1BO60663 MIR103A2-201ENST00000362154 78 ntBASIC1.08□□□□□ -2.24
LMX1BO60663 MIR30D-201ENST00000362283 70 ntBASIC1.08□□□□□ -2.24
LMX1BO60663 RNY1P13-201ENST00000365030 105 ntBASIC1.08□□□□□ -2.24
LMX1BO60663 RNU6-1014P-201ENST00000383940 103 ntBASIC1.08□□□□□ -2.24
LMX1BO60663 MIR7-2-201ENST00000384970 110 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms