Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNU6-733P-201ENST00000410759 104 ntBASIC0.69□□□□□ -2.3
HOXC11O43248 RNU7-102P-201ENST00000458948 62 ntBASIC0.69□□□□□ -2.3
HOXC11O43248 RNU6-138P-201ENST00000515952 107 ntBASIC0.69□□□□□ -2.3
HOXC11O43248 MIR3612-201ENST00000579753 87 ntBASIC0.69□□□□□ -2.3
HOXC11O43248 SNORD114-26-201ENST00000363543 72 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 RNU6-200P-201ENST00000364743 107 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 RNU6-818P-201ENST00000364837 108 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 RNY1P6-201ENST00000384193 109 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 RNU6-768P-201ENST00000384683 107 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 RNA5SP121-201ENST00000516537 101 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 AP002392.1-201ENST00000537692 208 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 SNORD92-201ENST00000585078 85 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 MIR6841-201ENST00000637129 72 ntBASIC0.68□□□□□ -2.3
HOXC11O43248 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.67□□□□□ -2.3
HOXC11O43248 AC018659.1-201ENST00000551083 169 ntBASIC0.67□□□□□ -2.3
HOXC11O43248 MIR3646-201ENST00000578301 84 ntBASIC0.67□□□□□ -2.3
HOXC11O43248 MIR6844-201ENST00000637122 62 ntBASIC0.67□□□□□ -2.3
HOXC11O43248 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
HOXC11O43248 Y_RNA.52-201ENST00000362760 96 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 RNU6-1082P-201ENST00000364574 107 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 SNORA75.5-201ENST00000391291 81 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 RNU5E-9P-201ENST00000411164 104 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 MTATP6P21-201ENST00000440681 189 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 RNU4-54P-201ENST00000516428 129 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 Y_RNA.700-201ENST00000516806 100 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 AC090897.1-201ENST00000580909 226 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.66□□□□□ -2.3
HOXC11O43248 MIR18A-201ENST00000362310 71 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 Y_RNA.257-201ENST00000364596 102 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 MIR140-201ENST00000385282 100 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 RNU6-239P-201ENST00000390990 99 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 RNU4-83P-201ENST00000410863 133 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 MTND5P15-201ENST00000434246 349 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 AC141846.1-201ENST00000568348 142 ntBASIC0.65□□□□□ -2.31
HOXC11O43248 RNU6-682P-201ENST00000363843 106 ntBASIC0.64□□□□□ -2.31
HOXC11O43248 SNORA18-201ENST00000384416 132 ntBASIC0.64□□□□□ -2.31
HOXC11O43248 AL022718.1-201ENST00000412004 84 ntBASIC0.64□□□□□ -2.31
HOXC11O43248 RNU7-120P-201ENST00000459334 63 ntBASIC0.64□□□□□ -2.31
HOXC11O43248 RNU6-861P-201ENST00000516745 106 ntBASIC0.64□□□□□ -2.31
HOXC11O43248 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.64□□□□□ -2.31
HOXC11O43248 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
HOXC11O43248 RNA5SP347-201ENST00000362445 119 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 Y_RNA.240-201ENST00000364469 95 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 RNA5SP117-201ENST00000365294 118 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 RNU6-1318P-201ENST00000365389 103 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 RNU6-945P-201ENST00000383947 107 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 SNORD37.2-201ENST00000391075 66 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.63□□□□□ -2.31
HOXC11O43248 RNU6-448P-201ENST00000517052 107 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 AC008608.1-201ENST00000603910 127 ntBASIC0.63□□□□□ -2.31
HOXC11O43248 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.63□□□□□ -2.31
HOXC11O43248 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
HOXC11O43248 Y_RNA.29-201ENST00000362570 113 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 RNU6-403P-201ENST00000363163 104 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 RNU4-84P-201ENST00000364200 139 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 MIR7-2-201ENST00000384970 110 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 MIR216A-201ENST00000385063 110 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 MIR936-201ENST00000401264 98 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 SNORD100-201ENST00000408573 76 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 Y_RNA.662-201ENST00000516028 97 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 RNU7-121P-201ENST00000516604 62 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 SNORA81.3-201ENST00000517283 198 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 Y_RNA.757-201ENST00000578934 114 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 RN7SL793P-201ENST00000583259 296 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 MIR3658-201ENST00000636291 56 ntBASIC0.62□□□□□ -2.31
HOXC11O43248 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.62□□□□□ -2.31
HOXC11O43248 Y_RNA.36-201ENST00000362602 112 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 RNU6-690P-201ENST00000365242 106 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 SNORD18B-201ENST00000365659 72 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 Y_RNA.785-201ENST00000384290 109 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 RNU7-113P-201ENST00000459273 62 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 AC002350.1-201ENST00000490759 375 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 RNA5SP236-201ENST00000516169 116 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 AC011603.4-201ENST00000611325 277 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 AC004792.1-201ENST00000614523 137 ntBASIC0.61□□□□□ -2.31
HOXC11O43248 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
HOXC11O43248 RNY1P11-201ENST00000363759 113 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 RNY1P8-201ENST00000383970 114 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 RNU6-949P-201ENST00000384040 107 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 RNU6-588P-201ENST00000410281 105 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 RNA5SP144-201ENST00000410846 116 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 AC092628.1-201ENST00000436250 252 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 AC074198.2-201ENST00000508153 258 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 MIR4711-201ENST00000578274 70 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 DNAJC19P2-201ENST00000593340 302 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.6□□□□□ -2.31
HOXC11O43248 RNU6-349P-201ENST00000362402 107 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 Y_RNA.441-201ENST00000384123 112 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 Y_RNA.497-201ENST00000384447 98 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 U8.15-201ENST00000390947 134 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 RNU6-679P-201ENST00000391003 106 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 RNU6-1086P-201ENST00000410930 100 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 RNU6-1258P-201ENST00000516911 111 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 RNU2-60P-201ENST00000517290 128 ntBASIC0.59□□□□□ -2.31
HOXC11O43248 Y_RNA.171-201ENST00000363760 102 ntBASIC0.58□□□□□ -2.32
HOXC11O43248 SNORA72.6-201ENST00000384520 129 ntBASIC0.58□□□□□ -2.32
HOXC11O43248 RNA5SP193-201ENST00000410353 107 ntBASIC0.58□□□□□ -2.32
HOXC11O43248 RNU6-1135P-201ENST00000411083 103 ntBASIC0.58□□□□□ -2.32
HOXC11O43248 RN7SKP12-201ENST00000516275 143 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 195.2 ms