Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.787-201ENST00000616522 101 ntBASIC0.38□□□□□ -2.35
SDC3O75056 Y_RNA.780-201ENST00000617336 101 ntBASIC0.38□□□□□ -2.35
SDC3O75056 Y_RNA.801-201ENST00000619005 101 ntBASIC0.38□□□□□ -2.35
SDC3O75056 MIR606-201ENST00000384851 96 ntBASIC0.37□□□□□ -2.35
SDC3O75056 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.37□□□□□ -2.35
SDC3O75056 AC002350.1-201ENST00000490759 375 ntBASIC0.37□□□□□ -2.35
SDC3O75056 RNU7-156P-201ENST00000517214 74 ntBASIC0.37□□□□□ -2.35
SDC3O75056 AC008608.1-201ENST00000603910 127 ntBASIC0.37□□□□□ -2.35
SDC3O75056 AL162730.1-201ENST00000605734 292 ntBASIC0.37□□□□□ -2.35
SDC3O75056 AC091932.4-201ENST00000623386 200 ntBASIC0.37□□□□□ -2.35
SDC3O75056 Y_RNA.76-201ENST00000362931 109 ntBASIC0.36□□□□□ -2.35
SDC3O75056 SNORA63-201ENST00000363450 132 ntBASIC0.36□□□□□ -2.35
SDC3O75056 Y_RNA.292-201ENST00000364904 97 ntBASIC0.36□□□□□ -2.35
SDC3O75056 Y_RNA.396-201ENST00000383949 103 ntBASIC0.36□□□□□ -2.35
SDC3O75056 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
SDC3O75056 RNU7-45P-201ENST00000459460 63 ntBASIC0.36□□□□□ -2.35
SDC3O75056 MIR3152-201ENST00000579801 74 ntBASIC0.36□□□□□ -2.35
SDC3O75056 MIR4744-201ENST00000581563 82 ntBASIC0.36□□□□□ -2.35
SDC3O75056 SNORA68.3-201ENST00000515906 83 ntBASIC0.35□□□□□ -2.35
SDC3O75056 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.35
SDC3O75056 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
SDC3O75056 RNU6-978P-201ENST00000364371 103 ntBASIC0.34□□□□□ -2.36
SDC3O75056 Y_RNA.277-201ENST00000364754 102 ntBASIC0.34□□□□□ -2.36
SDC3O75056 SNORA50A-201ENST00000384225 134 ntBASIC0.34□□□□□ -2.36
SDC3O75056 RNU6-738P-201ENST00000384531 106 ntBASIC0.34□□□□□ -2.36
SDC3O75056 Y_RNA.562-201ENST00000384695 113 ntBASIC0.34□□□□□ -2.36
SDC3O75056 MIR548H3-201ENST00000408771 118 ntBASIC0.34□□□□□ -2.36
SDC3O75056 SNORD127-201ENST00000458892 86 ntBASIC0.34□□□□□ -2.36
SDC3O75056 SNORD116-25-201ENST00000516517 92 ntBASIC0.34□□□□□ -2.36
SDC3O75056 RNU6-448P-201ENST00000517052 107 ntBASIC0.34□□□□□ -2.36
SDC3O75056 AC008737.2-201ENST00000599446 118 ntBASIC0.34□□□□□ -2.36
SDC3O75056 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.34□□□□□ -2.36
SDC3O75056 AL662814.1-201ENST00000617364 121 ntBASIC0.34□□□□□ -2.36
SDC3O75056 AC092634.7-201ENST00000621022 103 ntBASIC0.34□□□□□ -2.36
SDC3O75056 MIR6841-201ENST00000637129 72 ntBASIC0.34□□□□□ -2.36
SDC3O75056 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
SDC3O75056 Y_RNA.47-201ENST00000362697 108 ntBASIC0.33□□□□□ -2.36
SDC3O75056 Y_RNA.85-201ENST00000363014 111 ntBASIC0.33□□□□□ -2.36
SDC3O75056 RNU6-597P-201ENST00000365620 102 ntBASIC0.33□□□□□ -2.36
SDC3O75056 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.33□□□□□ -2.36
SDC3O75056 MIR378D2-201ENST00000580636 98 ntBASIC0.33□□□□□ -2.36
SDC3O75056 AC090625.1-201ENST00000357130 210 ntBASIC0.32□□□□□ -2.36
SDC3O75056 Y_RNA.54-201ENST00000362766 105 ntBASIC0.32□□□□□ -2.36
SDC3O75056 Y_RNA.121-201ENST00000363309 113 ntBASIC0.32□□□□□ -2.36
SDC3O75056 Y_RNA.149-201ENST00000363558 117 ntBASIC0.32□□□□□ -2.36
SDC3O75056 RNY4P28-201ENST00000365281 93 ntBASIC0.32□□□□□ -2.36
SDC3O75056 RNU6-578P-201ENST00000390980 103 ntBASIC0.32□□□□□ -2.36
SDC3O75056 SNORD58.1-201ENST00000391313 66 ntBASIC0.32□□□□□ -2.36
SDC3O75056 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.32□□□□□ -2.36
SDC3O75056 AL121914.1-201ENST00000450188 156 ntBASIC0.32□□□□□ -2.36
SDC3O75056 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
SDC3O75056 MIR2909-201ENST00000617113 69 ntBASIC0.32□□□□□ -2.36
SDC3O75056 MIR8066-201ENST00000617280 78 ntBASIC0.32□□□□□ -2.36
SDC3O75056 AL596211.1-201ENST00000569873 2277 ntBASIC0.32□□□□□ -2.36
SDC3O75056 Y_RNA.42-201ENST00000362660 108 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNA5SP517-201ENST00000364724 117 ntBASIC0.31□□□□□ -2.36
SDC3O75056 Y_RNA.288-201ENST00000364854 92 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNA5SP117-201ENST00000365294 118 ntBASIC0.31□□□□□ -2.36
SDC3O75056 SNORA20-201ENST00000384662 132 ntBASIC0.31□□□□□ -2.36
SDC3O75056 MIR624-201ENST00000385217 97 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNU6-679P-201ENST00000391003 106 ntBASIC0.31□□□□□ -2.36
SDC3O75056 SNORD93-201ENST00000408813 74 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNA5SP237-201ENST00000410414 113 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNU2-38P-201ENST00000410856 79 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
SDC3O75056 SNORA62.5-201ENST00000516634 120 ntBASIC0.31□□□□□ -2.36
SDC3O75056 SCARNA15-202ENST00000516881 127 ntBASIC0.31□□□□□ -2.36
SDC3O75056 RNA5SP94-201ENST00000516917 108 ntBASIC0.31□□□□□ -2.36
SDC3O75056 AP003327.1-201ENST00000529684 127 ntBASIC0.31□□□□□ -2.36
SDC3O75056 AC021613.1-201ENST00000623880 111 ntBASIC0.31□□□□□ -2.36
SDC3O75056 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.3□□□□□ -2.36
SDC3O75056 RNA5SP257-201ENST00000363023 116 ntBASIC0.3□□□□□ -2.36
SDC3O75056 Y_RNA.556-201ENST00000384677 113 ntBASIC0.3□□□□□ -2.36
SDC3O75056 MIR518A1-201ENST00000385068 85 ntBASIC0.3□□□□□ -2.36
SDC3O75056 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.3□□□□□ -2.36
SDC3O75056 RNU4-83P-201ENST00000410863 133 ntBASIC0.3□□□□□ -2.36
SDC3O75056 SNORA40.8-201ENST00000411034 126 ntBASIC0.3□□□□□ -2.36
SDC3O75056 RNA5SP127-201ENST00000411051 133 ntBASIC0.3□□□□□ -2.36
SDC3O75056 SEPT7P4-201ENST00000437076 306 ntBASIC0.3□□□□□ -2.36
SDC3O75056 MTND1P19-201ENST00000511780 315 ntBASIC0.3□□□□□ -2.36
SDC3O75056 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.3□□□□□ -2.36
SDC3O75056 uc_338.16-201ENST00000621804 95 ntBASIC0.3□□□□□ -2.36
SDC3O75056 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.29□□□□□ -2.36
SDC3O75056 RNU6-893P-201ENST00000458841 100 ntBASIC0.29□□□□□ -2.36
SDC3O75056 RNU7-70P-201ENST00000516941 66 ntBASIC0.29□□□□□ -2.36
SDC3O75056 AC141846.1-201ENST00000568348 142 ntBASIC0.29□□□□□ -2.36
SDC3O75056 MIR3678-201ENST00000578455 94 ntBASIC0.29□□□□□ -2.36
SDC3O75056 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
SDC3O75056 SNORA22.1-201ENST00000362701 134 ntBASIC0.28□□□□□ -2.36
SDC3O75056 Y_RNA.251-201ENST00000364551 99 ntBASIC0.28□□□□□ -2.36
SDC3O75056 Y_RNA.308-201ENST00000365043 101 ntBASIC0.28□□□□□ -2.36
SDC3O75056 RNU6-1327P-201ENST00000365302 105 ntBASIC0.28□□□□□ -2.36
SDC3O75056 Y_RNA.459-201ENST00000384251 102 ntBASIC0.28□□□□□ -2.36
SDC3O75056 U8.15-201ENST00000390947 134 ntBASIC0.28□□□□□ -2.36
SDC3O75056 SNORD71-201ENST00000411292 86 ntBASIC0.28□□□□□ -2.36
SDC3O75056 RPL39P25-201ENST00000449384 154 ntBASIC0.28□□□□□ -2.36
SDC3O75056 SNORA25.12-201ENST00000516202 82 ntBASIC0.28□□□□□ -2.36
SDC3O75056 RNY3P16-201ENST00000516338 101 ntBASIC0.28□□□□□ -2.36
SDC3O75056 RNU6-765P-201ENST00000516916 99 ntBASIC0.28□□□□□ -2.36
SDC3O75056 Y_RNA.20-201ENST00000362479 113 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms