Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 MRPL35P3-201ENST00000421557 364 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 snoU13.25-201ENST00000458945 104 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 U7.2-201ENST00000607576 63 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR6717-201ENST00000622747 73 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 AC021613.1-201ENST00000623880 111 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-910P-201ENST00000390844 107 ntBASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-460P-201ENST00000391158 108 ntBASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORA31.24-201ENST00000517232 57 ntBASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR3133-201ENST00000583157 78 ntBASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 AL022345.2-201ENST00000606307 135 ntBASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.48□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-349P-201ENST00000362402 107 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORA25.9-201ENST00000365087 128 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 Y_RNA.327-201ENST00000365201 102 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-690P-201ENST00000365242 106 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 AL603908.1-201ENST00000406098 201 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR1185-1-201ENST00000408598 86 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-613P-201ENST00000410412 108 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-426P-201ENST00000516464 97 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU2-60P-201ENST00000517290 128 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR4264-201ENST00000583520 66 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.47□□□□□ -2.17
PCDHGA3Q9Y5H0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR539-201ENST00000365690 78 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA25-201ENST00000384384 134 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR222-201ENST00000384992 110 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR320A-201ENST00000385302 82 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR1302-7-201ENST00000408841 72 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU7-90P-201ENST00000459216 62 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORD79.1-201ENST00000516069 84 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6-346P-201ENST00000516288 111 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 Y_RNA.686-201ENST00000516548 134 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR3121-201ENST00000579680 77 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 ZNF209P-201ENST00000593450 2304 ntBASIC1.46□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR377-201ENST00000362145 69 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA7.1-201ENST00000363750 139 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6-647P-201ENST00000364243 107 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA26.6-201ENST00000391256 115 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 AC133485.4-201ENST00000561835 220 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 AC138907.4-201ENST00000570107 226 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR4421-201ENST00000578133 69 ntBASIC1.45□□□□□ -2.18
PCDHGA3Q9Y5H0 RNY1P11-201ENST00000363759 113 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6-309P-201ENST00000364573 106 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA25.8-201ENST00000364831 128 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 AL022718.1-201ENST00000412004 84 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU7-21P-201ENST00000459430 62 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 AC091895.1-201ENST00000624494 256 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR6516-201ENST00000630554 81 ntBASIC1.44□□□□□ -2.18
PCDHGA3Q9Y5H0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 RNA5SP327-201ENST00000362494 101 ntBASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR1323-201ENST00000408090 73 ntBASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6-602P-201ENST00000411155 105 ntBASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR7974-201ENST00000615835 79 ntBASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.43□□□□□ -2.18
PCDHGA3Q9Y5H0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA22.1-201ENST00000362701 134 ntBASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6-704P-201ENST00000364162 103 ntBASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 Y_RNA.330-201ENST00000365230 109 ntBASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU5E-3P-201ENST00000515913 68 ntBASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.42□□□□□ -2.18
PCDHGA3Q9Y5H0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 RNU6-774P-201ENST00000363238 107 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORD113.3-201ENST00000364630 78 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA75.2-201ENST00000391138 150 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORA75.3-201ENST00000391231 150 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 SNORD111-201ENST00000408139 94 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 Y_RNA.651-201ENST00000459380 103 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR4305-201ENST00000583252 102 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 MIR6841-201ENST00000637129 72 ntBASIC1.41□□□□□ -2.18
PCDHGA3Q9Y5H0 Y_RNA.168-201ENST00000363740 102 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 MIR150-201ENST00000385048 84 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 RNA5SP144-201ENST00000410846 116 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 AC063976.4-201ENST00000421971 163 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 MTND4LP9-201ENST00000427694 174 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 HMGN1P33-201ENST00000432945 451 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU7-45P-201ENST00000459460 63 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU6-240P-201ENST00000516098 97 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU1-92P-201ENST00000517017 135 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 AC021443.1-201ENST00000604478 211 ntBASIC1.4□□□□□ -2.19
PCDHGA3Q9Y5H0 Y_RNA.114-201ENST00000363265 113 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU6-580P-201ENST00000365159 107 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 MIR1276-201ENST00000408707 83 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU6-257P-201ENST00000410238 98 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU6-1190P-201ENST00000410811 104 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 AC019288.1-201ENST00000557918 224 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 AL137067.1-201ENST00000615933 120 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 AC027335.2-201ENST00000624030 375 ntBASIC1.39□□□□□ -2.19
PCDHGA3Q9Y5H0 RNU4-16P-201ENST00000364737 141 ntBASIC1.38□□□□□ -2.19
PCDHGA3Q9Y5H0 MIR618-201ENST00000385287 98 ntBASIC1.38□□□□□ -2.19
PCDHGA3Q9Y5H0 MIR1304-201ENST00000408243 91 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms