Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
NUP88Q99567 RNA5SP261-201ENST00000410536 106 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 HMGN1P33-201ENST00000432945 451 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 MTATP6P21-201ENST00000440681 189 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 RNU7-45P-201ENST00000459460 63 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 SNORD79.1-201ENST00000516069 84 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 RNU11-2P-201ENST00000516898 142 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.43□□□□□ -2.18
NUP88Q99567 SNORD114-27-201ENST00000363766 70 ntBASIC1.42□□□□□ -2.18
NUP88Q99567 Y_RNA.180-201ENST00000363867 113 ntBASIC1.42□□□□□ -2.18
NUP88Q99567 AC063976.4-201ENST00000421971 163 ntBASIC1.42□□□□□ -2.18
NUP88Q99567 RNU7-90P-201ENST00000459216 62 ntBASIC1.42□□□□□ -2.18
NUP88Q99567 MIR4452-201ENST00000583004 71 ntBASIC1.42□□□□□ -2.18
NUP88Q99567 AL020996.3-201ENST00000606617 222 ntBASIC1.42□□□□□ -2.18
NUP88Q99567 SNORD114-22-201ENST00000365423 72 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 Y_RNA.497-201ENST00000384447 98 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 SNORD38B-201ENST00000384690 67 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 Y_RNA.580-201ENST00000391004 95 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 RNU6-1190P-201ENST00000410811 104 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 SCARNA15-202ENST00000516881 127 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 AP003716.2-201ENST00000528260 108 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 AC023827.1-201ENST00000569247 97 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.41□□□□□ -2.18
NUP88Q99567 SNORD38B-202ENST00000625943 69 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 MIR6516-201ENST00000630554 81 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 AC021753.1-201ENST00000635724 168 ntBASIC1.41□□□□□ -2.18
NUP88Q99567 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.18
NUP88Q99567 RNU6-654P-201ENST00000364373 107 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 RNU4-16P-201ENST00000364737 141 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 SNORA2B-201ENST00000384583 137 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 SNORD12-201ENST00000391002 90 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 MIR1302-7-201ENST00000408841 72 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 RNA5SP95-201ENST00000410319 137 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 AL392103.1-201ENST00000447000 198 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 RNU7-21P-201ENST00000459430 62 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 RNU5E-3P-201ENST00000515913 68 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 SNORA25.12-201ENST00000516202 82 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 MIR3152-201ENST00000579801 74 ntBASIC1.4□□□□□ -2.19
NUP88Q99567 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
NUP88Q99567 RNU6-205P-201ENST00000390858 107 ntBASIC1.39□□□□□ -2.19
NUP88Q99567 AC090844.1-201ENST00000422019 156 ntBASIC1.39□□□□□ -2.19
NUP88Q99567 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.39□□□□□ -2.19
NUP88Q99567 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.39□□□□□ -2.19
NUP88Q99567 MT-TR-201ENST00000387439 65 ntBASIC1.38□□□□□ -2.19
NUP88Q99567 RPS3AP1-201ENST00000413190 320 ntBASIC1.38□□□□□ -2.19
NUP88Q99567 MTND5P41-201ENST00000517498 206 ntBASIC1.38□□□□□ -2.19
NUP88Q99567 AC027335.2-201ENST00000624030 375 ntBASIC1.38□□□□□ -2.19
NUP88Q99567 Y_RNA.464-201ENST00000384282 110 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 RNU6-125P-201ENST00000384505 107 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 RNU6-994P-201ENST00000410507 111 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 AL078603.1-201ENST00000603824 313 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 MIR8055-201ENST00000610739 97 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 MIR6734-201ENST00000621166 68 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 MIR6717-201ENST00000622747 73 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 Z97988.1-201ENST00000637697 135 ntBASIC1.37□□□□□ -2.19
NUP88Q99567 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
NUP88Q99567 Y_RNA.400-201ENST00000383963 111 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 RNY1P6-201ENST00000384193 109 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 AC002429.1-201ENST00000437672 148 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 MIR548X2-201ENST00000579776 100 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 MIR4264-201ENST00000583520 66 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 HSPE1P19-201ENST00000603327 295 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 AC021613.1-201ENST00000623880 111 ntBASIC1.36□□□□□ -2.19
NUP88Q99567 RNU6-690P-201ENST00000365242 106 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 Y_RNA.354-201ENST00000365448 111 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 RNU6-42P-201ENST00000384165 107 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 RNU6-613P-201ENST00000410412 108 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 RN7SKP179-201ENST00000516126 217 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 Y_RNA.690-201ENST00000516603 95 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 RMST_2.1-201ENST00000617263 136 ntBASIC1.35□□□□□ -2.19
NUP88Q99567 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.19
NUP88Q99567 RNY1P11-201ENST00000363759 113 ntBASIC1.34□□□□□ -2.19
NUP88Q99567 Y_RNA.215-201ENST00000364204 112 ntBASIC1.34□□□□□ -2.19
NUP88Q99567 RNU6-460P-201ENST00000391158 108 ntBASIC1.34□□□□□ -2.19
NUP88Q99567 RNU6-602P-201ENST00000411155 105 ntBASIC1.34□□□□□ -2.19
NUP88Q99567 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.34□□□□□ -2.19
NUP88Q99567 MIR6767-201ENST00000637302 66 ntBASIC1.34□□□□□ -2.19
NUP88Q99567 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
NUP88Q99567 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.33□□□□□ -2.2
NUP88Q99567 Y_RNA.170-201ENST00000363746 110 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 SNORD113.3-201ENST00000364630 78 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 Y_RNA.488-201ENST00000384403 102 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 MIR618-201ENST00000385287 98 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 MT-TN-201ENST00000387400 73 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNU6-1319P-201ENST00000390855 104 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNU6-747P-201ENST00000390928 104 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNU6-241P-201ENST00000391148 104 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNU6-177P-201ENST00000411257 104 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNU7-62P-201ENST00000458856 62 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNA5SP220-201ENST00000516298 104 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 Y_RNA.686-201ENST00000516548 134 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 RNA5SP404-201ENST00000517118 132 ntBASIC1.33□□□□□ -2.2
NUP88Q99567 SNORA22.1-201ENST00000362701 134 ntBASIC1.32□□□□□ -2.2
NUP88Q99567 Y_RNA.120-201ENST00000363304 110 ntBASIC1.32□□□□□ -2.2
NUP88Q99567 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
NUP88Q99567 AC067940.1-201ENST00000458411 300 ntBASIC1.32□□□□□ -2.2
NUP88Q99567 RNA5SP236-201ENST00000516169 116 ntBASIC1.32□□□□□ -2.2
NUP88Q99567 RNU6-94P-201ENST00000607728 107 ntBASIC1.32□□□□□ -2.2
NUP88Q99567 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 577.9 ms