Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL9A1P20849 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL9A1P20849 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL9A1P20849 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3.21□□□□□ -1.9
COL9A1P20849 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL9A1P20849 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL9A1P20849 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
COL9A1P20849 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL9A1P20849 RNU6-208P-201ENST00000362431 107 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 RNU6-800P-201ENST00000384473 103 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 AC019129.1-201ENST00000403786 261 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 AC015818.7-201ENST00000428754 109 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 RNVU1-2-201ENST00000516326 135 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 MIR3064-201ENST00000581130 66 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 SNORD92-201ENST00000585078 85 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 U6.111-201ENST00000636093 83 ntBASIC3.2□□□□□ -1.9
COL9A1P20849 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.2□□□□□ -1.9
COL9A1P20849 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL9A1P20849 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.2□□□□□ -1.9
COL9A1P20849 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL9A1P20849 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.19□□□□□ -1.9
COL9A1P20849 RNU6-471P-201ENST00000383944 106 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 Y_RNA.491-201ENST00000384417 107 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 RNU6-1254P-201ENST00000391266 104 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 Y_RNA.596-201ENST00000410462 109 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 RNU6-141P-201ENST00000410499 105 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 RNU7-26P-201ENST00000458980 63 ntBASIC3.19□□□□□ -1.9
COL9A1P20849 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL9A1P20849 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.19□□□□□ -1.9
COL9A1P20849 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL9A1P20849 SNORD36A-201ENST00000362874 73 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 RNU6-112P-201ENST00000363599 104 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 RNU1-91P-201ENST00000364746 163 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 RNU6-296P-201ENST00000384608 107 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 MIR1283-2-201ENST00000408621 87 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 ARF4P2-201ENST00000430209 526 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 AC121758.2-201ENST00000553271 193 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 MIR4648-201ENST00000580107 72 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 AC067747.1-201ENST00000608026 250 ntBASIC3.18□□□□□ -1.9
COL9A1P20849 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.18□□□□□ -1.9
COL9A1P20849 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL9A1P20849 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
COL9A1P20849 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL9A1P20849 AL161431.1-201ENST00000618966 4205 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL9A1P20849 MIR423-201ENST00000362201 94 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 RNU6-540P-201ENST00000384622 101 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 MIR512-1-201ENST00000384913 84 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 MIR627-201ENST00000384979 97 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 RNU6-243P-201ENST00000391140 107 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 RHEBP3-201ENST00000411920 351 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 AL159169.1-201ENST00000421119 127 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 snoU13.2-201ENST00000459201 104 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 AC005908.1-201ENST00000468701 347 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 MIR4498-201ENST00000577599 66 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 AC244205.2-202ENST00000635781 342 ntBASIC3.17□□□□□ -1.9
COL9A1P20849 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL9A1P20849 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL9A1P20849 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL9A1P20849 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL9A1P20849 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL9A1P20849 Y_RNA.119-201ENST00000363301 96 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 Y_RNA.283-201ENST00000364798 112 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 MIR499A-201ENST00000384903 122 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 RNU6-466P-201ENST00000391224 103 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 BX276092.1-201ENST00000427368 251 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 AC087499.2-201ENST00000432861 149 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 AC104389.3-201ENST00000445629 235 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 AC107016.2-201ENST00000547968 190 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 AL096861.1-201ENST00000610899 123 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 U6.109-201ENST00000636749 87 ntBASIC3.16□□□□□ -1.9
COL9A1P20849 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL9A1P20849 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL9A1P20849 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
COL9A1P20849 SNORA67.4-201ENST00000384688 142 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
COL9A1P20849 SNORD67-201ENST00000390833 111 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 RN7SL499P-201ENST00000481141 276 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 RNU6-75P-201ENST00000515944 104 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 YWHAEP2-201ENST00000580066 112 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 YWHAEP3-201ENST00000582767 121 ntBASIC3.15□□□□□ -1.91
COL9A1P20849 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL9A1P20849 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.14□□□□□ -1.91
COL9A1P20849 MIR30E-201ENST00000362104 92 ntBASIC3.14□□□□□ -1.91
COL9A1P20849 RNU6-132P-201ENST00000383863 107 ntBASIC3.14□□□□□ -1.91
COL9A1P20849 RNU1-148P-201ENST00000384472 162 ntBASIC3.14□□□□□ -1.91
COL9A1P20849 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL9A1P20849 HMGN2P23-201ENST00000456759 269 ntBASIC3.14□□□□□ -1.91
COL9A1P20849 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.14□□□□□ -1.91
COL9A1P20849 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC3.14□□□□□ -1.91
COL9A1P20849 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.14□□□□□ -1.91
COL9A1P20849 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.14□□□□□ -1.91
COL9A1P20849 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL9A1P20849 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL9A1P20849 RNU6-1123P-201ENST00000362347 106 ntBASIC3.13□□□□□ -1.91
COL9A1P20849 MIR154-201ENST00000385243 84 ntBASIC3.13□□□□□ -1.91
COL9A1P20849 Z98941.1-201ENST00000407764 100 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 183.9 ms