Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHB3Q9Y5E6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 RNU6-811P-201ENST00000384069 107 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 Y_RNA.500-201ENST00000384466 111 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 MIR627-201ENST00000384979 97 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 RNA5SP292-201ENST00000390974 118 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 AL023284.1-201ENST00000403956 276 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 RNA5SP237-201ENST00000410414 113 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 AC027119.1-201ENST00000440877 241 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 S100A11P2-201ENST00000467589 312 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 MIR548AO-201ENST00000579992 96 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 MIR4764-201ENST00000580680 88 ntBASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHB3Q9Y5E6 SNORD56.5-201ENST00000364281 72 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 MIR635-201ENST00000384830 98 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 MIR520A-201ENST00000384862 85 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 AC019129.1-201ENST00000403786 261 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 RNU2-7P-201ENST00000410794 178 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 RNU6-807P-201ENST00000516805 107 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 RNU6-850P-201ENST00000516934 103 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 MIR4709-201ENST00000577272 72 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 AL035425.3-201ENST00000564206 4996 ntBASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PCDHB3Q9Y5E6 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 SNORD38B-201ENST00000384690 67 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 RNU11-3P-201ENST00000391111 133 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 RNA5SP229-201ENST00000410809 99 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 AC005908.1-201ENST00000468701 347 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 RPS27P21-201ENST00000486977 252 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 Y_RNA.681-201ENST00000516445 113 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 MIR4506-201ENST00000584693 77 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 AL662814.1-201ENST00000617364 121 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 SNORD38B-202ENST00000625943 69 ntBASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.1□□□□□ -1.91
PCDHB3Q9Y5E6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 AC011753.1-201ENST00000451001 220 ntBASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 RNVU1-2-201ENST00000516326 135 ntBASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 MIR4500-201ENST00000579472 76 ntBASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 AC006386.2-201ENST00000624491 75 ntBASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 AC012005.1-201ENST00000624575 75 ntBASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 MIR1297-201ENST00000637311 77 ntBASIC3.09□□□□□ -1.91
PCDHB3Q9Y5E6 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.09□□□□□ -1.92
PCDHB3Q9Y5E6 Y_RNA.205-201ENST00000364128 113 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-949P-201ENST00000384040 107 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-649P-201ENST00000384463 107 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 SNORA72.6-201ENST00000384520 129 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 SNORA46-201ENST00000384762 135 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 MIR520H-201ENST00000385126 88 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 RN7SL75P-201ENST00000461926 281 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 SNORA18.5-201ENST00000516616 101 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 MIR6852-201ENST00000621699 66 ntBASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHB3Q9Y5E6 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 UQCRHP3-201ENST00000451503 251 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 snoU13.27-201ENST00000459278 104 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 RN7SL863P-201ENST00000462370 296 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 RNA5SP385-201ENST00000515947 110 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 EIF4BP1-201ENST00000554881 351 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 AC138749.4-201ENST00000563970 127 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 WWP1P1-201ENST00000466609 2769 ntBASIC3.07□□□□□ -1.92
PCDHB3Q9Y5E6 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 MIR424-201ENST00000362227 98 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-571P-201ENST00000384128 107 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 MIR520C-201ENST00000385005 87 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 SNORD77.2-201ENST00000391045 68 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 MIR1283-2-201ENST00000408621 87 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 RNU2-59P-201ENST00000410482 191 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 RN7SKP123-201ENST00000410732 291 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 RNA5SP492-201ENST00000411330 114 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 AC092427.1-202ENST00000430569 476 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 MIR2682-201ENST00000580305 110 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 MIR4536-1-201ENST00000583537 88 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PCDHB3Q9Y5E6 AC023790.1-201ENST00000482174 347 ntBASIC3.05□□□□□ -1.92
PCDHB3Q9Y5E6 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.05□□□□□ -1.92
PCDHB3Q9Y5E6 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3.05□□□□□ -1.92
PCDHB3Q9Y5E6 MIR7106-201ENST00000612419 65 ntBASIC3.05□□□□□ -1.92
PCDHB3Q9Y5E6 MIR664A-201ENST00000626086 82 ntBASIC3.05□□□□□ -1.92
PCDHB3Q9Y5E6 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHB3Q9Y5E6 RNU5F-1-201ENST00000362507 117 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 SNORA7.4-201ENST00000384249 137 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 195.9 ms