Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR4791-201ENST00000607666 84 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 AC021753.1-201ENST00000635724 168 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-34-201ENST00000362441 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-12-201ENST00000362583 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-29-201ENST00000362834 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-9-201ENST00000362912 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-21-201ENST00000362963 81 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-14-201ENST00000363090 81 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-13-201ENST00000363358 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-41-201ENST00000363608 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-11-201ENST00000363616 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-5-201ENST00000363633 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-39-201ENST00000363694 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-4-201ENST00000363810 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-16-201ENST00000363887 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-6-201ENST00000363942 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-42-201ENST00000364273 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.241-201ENST00000364470 117 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 RNU4-38P-201ENST00000364472 129 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-15-201ENST00000364809 81 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-1-201ENST00000364961 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-26-201ENST00000365067 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-10-201ENST00000365073 81 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.337-201ENST00000365312 102 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-43-201ENST00000365503 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-36-201ENST00000365629 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 RNU6-1292P-201ENST00000383856 107 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.398-201ENST00000383952 99 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.410-201ENST00000383992 113 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORA24-201ENST00000384096 131 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 MIR624-201ENST00000385217 97 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.580-201ENST00000391004 95 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 MRPL35P3-201ENST00000421557 364 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD124-201ENST00000459577 104 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SCARNA15-202ENST00000516881 127 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 RNU11-2P-201ENST00000516898 142 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 RNU6-255P-201ENST00000516957 105 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-40-201ENST00000606510 82 ntBASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.170-201ENST00000363746 110 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.327-201ENST00000365201 102 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 RNU6-1189P-201ENST00000383958 107 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 SNORD116-18-201ENST00000383961 92 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.464-201ENST00000384282 110 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.521-201ENST00000384560 114 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 SNORA40.5-201ENST00000391061 128 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 MIR1302-7-201ENST00000408841 72 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 RNA5SP127-201ENST00000411051 133 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 AL392103.1-201ENST00000447000 198 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 MIR4295-201ENST00000585286 85 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 DNAJC19P2-201ENST00000593340 302 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 AC243994.1-201ENST00000618627 109 ntBASIC1.08□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.8-201ENST00000362353 102 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.338-201ENST00000365320 114 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 SNORA22-201ENST00000383907 134 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 SNORA27-201ENST00000384323 126 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 SNORA22C-201ENST00000384614 134 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 MIR200A-201ENST00000384875 90 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 SNORA75.5-201ENST00000391291 81 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 RNU6-588P-201ENST00000410281 105 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 AC107297.1-201ENST00000459991 176 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 RNU2-60P-201ENST00000517290 128 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 MIR4781-201ENST00000585250 76 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 MTND1P7-201ENST00000632801 297 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 AL391516.1-201ENST00000554380 2449 ntBASIC1.07□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.52-201ENST00000362760 96 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 SNORA25.7-201ENST00000364375 127 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.251-201ENST00000364551 99 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 SNORD114-24-201ENST00000365029 72 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 AL603825.1-201ENST00000438481 80 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 RNU7-197P-201ENST00000458836 62 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 AC087343.1-201ENST00000477341 475 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 RPS29P24-201ENST00000486345 171 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 MIR4498-201ENST00000577599 66 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 MIR3646-201ENST00000578301 84 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 AC091895.1-201ENST00000624494 256 ntBASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
LIMA1Q9UHB6 RNU4-11P-201ENST00000365287 132 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.497-201ENST00000384447 98 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 RNU6-913P-201ENST00000390913 95 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 RNU6-998P-201ENST00000515894 101 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 RNA5SP236-201ENST00000516169 116 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 RNU6-1149P-201ENST00000516810 97 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 AC023827.1-201ENST00000569247 97 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 MIR548AO-201ENST00000579992 96 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 AC131055.1-201ENST00000584626 316 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 HSPE1P19-201ENST00000603327 295 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 AL359821.1-201ENST00000605519 182 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 AC012676.2-201ENST00000619258 186 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 Y_RNA.778-201ENST00000620203 90 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 MIR6516-201ENST00000630554 81 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 MIR6844-201ENST00000637122 62 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 MTND5P32-201ENST00000560711 1802 ntBASIC1.05□□□□□ -2.24
LIMA1Q9UHB6 RNU6-151P-201ENST00000364158 107 ntBASIC1.04□□□□□ -2.24
LIMA1Q9UHB6 RNU6-449P-201ENST00000383914 107 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 186.2 ms