Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MIR6078-201ENST00000611069 100 ntBASIC1.09□□□□□ -2.23
SIX2Q9NPC8 Y_RNA.778-201ENST00000620203 90 ntBASIC1.09□□□□□ -2.23
SIX2Q9NPC8 MIR8065-201ENST00000620577 100 ntBASIC1.09□□□□□ -2.23
SIX2Q9NPC8 AC021753.1-201ENST00000635724 168 ntBASIC1.09□□□□□ -2.23
SIX2Q9NPC8 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
SIX2Q9NPC8 AL161722.3-201ENST00000605789 2983 ntBASIC1.09□□□□□ -2.24
SIX2Q9NPC8 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.08□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.52-201ENST00000362760 96 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 SNORA25.3-201ENST00000363205 127 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNU6-151P-201ENST00000364158 107 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNU4-38P-201ENST00000364472 129 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNU4-11P-201ENST00000365287 132 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 SNORD26-201ENST00000384147 75 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 SNORD37.2-201ENST00000391075 66 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 AL035398.1-201ENST00000430869 322 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNU7-73P-201ENST00000458743 63 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNU6-1149P-201ENST00000516810 97 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNU6-958P-201ENST00000516995 106 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 MTND5P41-201ENST00000517498 206 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 MIR4295-201ENST00000585286 85 ntBASIC1.08□□□□□ -2.24
SIX2Q9NPC8 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.08□□□□□ -2.24
SIX2Q9NPC8 RNA5SP264-201ENST00000363115 107 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.351-201ENST00000365436 96 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.497-201ENST00000384447 98 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 MIR1302-7-201ENST00000408841 72 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 RNU2-11P-201ENST00000459191 187 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 snoU13.16-201ENST00000459350 104 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 RNU7-80P-201ENST00000459562 61 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 SNORA31.4-201ENST00000516049 129 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 RNU7-53P-201ENST00000516705 60 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 AC112693.2-201ENST00000556538 232 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 MIR548AO-201ENST00000579992 96 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 AC131055.1-201ENST00000584626 316 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 PRELID3BP2-201ENST00000605362 201 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 AC103810.9-201ENST00000606688 112 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 snoU13.31-201ENST00000607291 104 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 AC091932.4-201ENST00000623386 200 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 MTND5P32-201ENST00000560711 1802 ntBASIC1.07□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.170-201ENST00000363746 110 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 RNY1P11-201ENST00000363759 113 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.251-201ENST00000364551 99 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.363-201ENST00000365529 113 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 RNU6-913P-201ENST00000390913 95 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 MIR1185-1-201ENST00000408598 86 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 AL392103.1-201ENST00000447000 198 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 RNU6-255P-201ENST00000516957 105 ntBASIC1.06□□□□□ -2.24
SIX2Q9NPC8 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.06□□□□□ -2.24
SIX2Q9NPC8 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.06□□□□□ -2.24
SIX2Q9NPC8 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.06□□□□□ -2.24
SIX2Q9NPC8 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.06□□□□□ -2.24
SIX2Q9NPC8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
SIX2Q9NPC8 MIR103A2-201ENST00000362154 78 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 MIR342-201ENST00000362212 99 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.327-201ENST00000365201 102 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.454-201ENST00000384224 113 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 AC087343.1-201ENST00000477341 475 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 RNA5SP236-201ENST00000516169 116 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.05□□□□□ -2.24
SIX2Q9NPC8 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.04□□□□□ -2.24
SIX2Q9NPC8 MIR26B-201ENST00000362251 77 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 RNA5SP327-201ENST00000362494 101 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.400-201ENST00000383963 111 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 RNU6-910P-201ENST00000390844 107 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 Y_RNA.584-201ENST00000391090 114 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 RNU7-197P-201ENST00000458836 62 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 RNU7-200P-201ENST00000516105 62 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 RNU2-60P-201ENST00000517290 128 ntBASIC1.04□□□□□ -2.24
SIX2Q9NPC8 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.04□□□□□ -2.24
SIX2Q9NPC8 AL596211.1-201ENST00000569873 2277 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 MIR302B-201ENST00000362188 73 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 RNU1-133P-201ENST00000364867 167 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 RNU6-392P-201ENST00000364926 101 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 SNORA75.2-201ENST00000391138 150 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 SNORA75.3-201ENST00000391231 150 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 RNU11-2P-201ENST00000516898 142 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 RNU7-70P-201ENST00000516941 66 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.03□□□□□ -2.24
SIX2Q9NPC8 AL022345.2-201ENST00000606307 135 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 AL020996.3-201ENST00000606617 222 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 MIR8055-201ENST00000610739 97 ntBASIC1.03□□□□□ -2.24
SIX2Q9NPC8 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
SIX2Q9NPC8 Y_RNA.215-201ENST00000364204 112 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 RNU6-1190P-201ENST00000410811 104 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 AC090844.1-201ENST00000422019 156 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 HMGN1P33-201ENST00000432945 451 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 SNORD79.1-201ENST00000516069 84 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 SNORA70.22-201ENST00000517160 124 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 MIR4498-201ENST00000577599 66 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 MIR548X2-201ENST00000579776 100 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 Z97988.1-201ENST00000637697 135 ntBASIC1.02□□□□□ -2.25
SIX2Q9NPC8 Y_RNA.120-201ENST00000363304 110 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 RNY1P5-201ENST00000383890 115 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 RNU6-1062P-201ENST00000383908 107 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 SNORA25-201ENST00000384384 134 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 Y_RNA.506-201ENST00000384494 102 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 SNORA26.6-201ENST00000391256 115 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 MIR513C-201ENST00000401352 84 ntBASIC1.01□□□□□ -2.25
SIX2Q9NPC8 MRPL35P3-201ENST00000421557 364 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms