Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 MIR7110-201ENST00000612638 86 ntBASIC5.59□□□□□ -1.51
SENP3Q9H4L4 MIR6516-201ENST00000630554 81 ntBASIC5.59□□□□□ -1.51
SENP3Q9H4L4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SENP3Q9H4L4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3Q9H4L4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.58□□□□□ -1.52
SENP3Q9H4L4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3Q9H4L4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.57□□□□□ -1.52
SENP3Q9H4L4 RNA5SP295-201ENST00000362655 121 ntBASIC5.57□□□□□ -1.52
SENP3Q9H4L4 MIR548AG2-201ENST00000581228 64 ntBASIC5.57□□□□□ -1.52
SENP3Q9H4L4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SENP3Q9H4L4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC5.57□□□□□ -1.52
SENP3Q9H4L4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SENP3Q9H4L4 RNA5SP309-201ENST00000516670 106 ntBASIC5.56□□□□□ -1.52
SENP3Q9H4L4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC5.56□□□□□ -1.52
SENP3Q9H4L4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SENP3Q9H4L4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SENP3Q9H4L4 AC108206.1-201ENST00000570186 4159 ntBASIC5.56□□□□□ -1.52
SENP3Q9H4L4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SENP3Q9H4L4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SENP3Q9H4L4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SENP3Q9H4L4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3Q9H4L4 RNA5SP126-201ENST00000365092 109 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 RNU6-1126P-201ENST00000384002 107 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 MIR521-2-201ENST00000384818 87 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 RNA5SP95-201ENST00000410319 137 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 RN7SL601P-201ENST00000471221 293 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 AC018659.1-201ENST00000551083 169 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 AC020914.4-201ENST00000597690 277 ntBASIC5.55□□□□□ -1.52
SENP3Q9H4L4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SENP3Q9H4L4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
SENP3Q9H4L4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC5.54□□□□□ -1.52
SENP3Q9H4L4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SENP3Q9H4L4 RNA5SP50-201ENST00000363731 107 ntBASIC5.54□□□□□ -1.52
SENP3Q9H4L4 AC025445.1-201ENST00000502728 300 ntBASIC5.54□□□□□ -1.52
SENP3Q9H4L4 IGLV3-26-201ENST00000520756 302 ntBASIC5.54□□□□□ -1.52
SENP3Q9H4L4 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.54□□□□□ -1.52
SENP3Q9H4L4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
SENP3Q9H4L4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
SENP3Q9H4L4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
SENP3Q9H4L4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.53□□□□□ -1.52
SENP3Q9H4L4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SENP3Q9H4L4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.53□□□□□ -1.52
SENP3Q9H4L4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.53□□□□□ -1.52
SENP3Q9H4L4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC5.52□□□□□ -1.53
SENP3Q9H4L4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3Q9H4L4 RNU6-364P-201ENST00000384387 107 ntBASIC5.52□□□□□ -1.53
SENP3Q9H4L4 SNORA40B-201ENST00000385573 128 ntBASIC5.52□□□□□ -1.53
SENP3Q9H4L4 HMGN2P3-201ENST00000433603 273 ntBASIC5.52□□□□□ -1.53
SENP3Q9H4L4 HMGN2P5-201ENST00000436882 273 ntBASIC5.52□□□□□ -1.53
SENP3Q9H4L4 SNORD59.2-201ENST00000516873 68 ntBASIC5.52□□□□□ -1.53
SENP3Q9H4L4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.52□□□□□ -1.53
SENP3Q9H4L4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3Q9H4L4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3Q9H4L4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3Q9H4L4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.51□□□□□ -1.53
SENP3Q9H4L4 SNORA38.1-201ENST00000364172 131 ntBASIC5.51□□□□□ -1.53
SENP3Q9H4L4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SENP3Q9H4L4 RNA5SP120-201ENST00000410900 112 ntBASIC5.51□□□□□ -1.53
SENP3Q9H4L4 SNRPGP19-201ENST00000603826 189 ntBASIC5.51□□□□□ -1.53
SENP3Q9H4L4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC5.51□□□□□ -1.53
SENP3Q9H4L4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 AP006437.1-201ENST00000641440 3685 ntBASIC5.5□□□□□ -1.53
SENP3Q9H4L4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 Y_RNA.250-201ENST00000364542 110 ntBASIC5.5□□□□□ -1.53
SENP3Q9H4L4 RNU6-535P-201ENST00000384722 107 ntBASIC5.5□□□□□ -1.53
SENP3Q9H4L4 MIR8057-201ENST00000620957 69 ntBASIC5.5□□□□□ -1.53
SENP3Q9H4L4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3Q9H4L4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
SENP3Q9H4L4 RNU1-15P-201ENST00000353977 144 ntBASIC5.49□□□□□ -1.53
SENP3Q9H4L4 ARF4P2-201ENST00000430209 526 ntBASIC5.49□□□□□ -1.53
SENP3Q9H4L4 AC105272.1-201ENST00000438604 198 ntBASIC5.49□□□□□ -1.53
SENP3Q9H4L4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.49□□□□□ -1.53
SENP3Q9H4L4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.49□□□□□ -1.53
SENP3Q9H4L4 MIR4474-201ENST00000579189 78 ntBASIC5.49□□□□□ -1.53
SENP3Q9H4L4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SENP3Q9H4L4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SENP3Q9H4L4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3Q9H4L4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3Q9H4L4 SNORD9-201ENST00000362566 104 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 MIR1251-201ENST00000408552 70 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 MIR1283-2-201ENST00000408621 87 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 RNA5SP344-201ENST00000411081 104 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 SNORA70.18-201ENST00000516696 98 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 LINC01355-201ENST00000566551 5444 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 OTUD4P1-201ENST00000237841 3067 ntBASIC5.48□□□□□ -1.53
SENP3Q9H4L4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3Q9H4L4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3Q9H4L4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SENP3Q9H4L4 RNU6V-201ENST00000384105 107 ntBASIC5.47□□□□□ -1.53
SENP3Q9H4L4 SNORD41-201ENST00000386967 70 ntBASIC5.47□□□□□ -1.53
SENP3Q9H4L4 COTL1P1-201ENST00000422309 375 ntBASIC5.47□□□□□ -1.53
SENP3Q9H4L4 AL137849.1-201ENST00000604767 169 ntBASIC5.47□□□□□ -1.53
SENP3Q9H4L4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SENP3Q9H4L4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SENP3Q9H4L4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SENP3Q9H4L4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 257 ms