Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.92□□□□□ -1.94
USB1Q9BQ65 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USB1Q9BQ65 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.91□□□□□ -1.94
USB1Q9BQ65 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USB1Q9BQ65 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.91□□□□□ -1.94
USB1Q9BQ65 RNU6-624P-201ENST00000363411 107 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 SNORA9-201ENST00000384215 133 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 HMGN1P18-201ENST00000457642 277 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 RNU6-56P-201ENST00000516986 93 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 MIR5004-201ENST00000579078 107 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 AL512598.1-201ENST00000610158 273 ntBASIC2.91□□□□□ -1.94
USB1Q9BQ65 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
USB1Q9BQ65 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USB1Q9BQ65 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
USB1Q9BQ65 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.94
USB1Q9BQ65 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.94
USB1Q9BQ65 RNU1-51P-201ENST00000365345 176 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 RNU6-949P-201ENST00000384040 107 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 RNU4-83P-201ENST00000410863 133 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 RNA5SP492-201ENST00000411330 114 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.9□□□□□ -1.95
USB1Q9BQ65 snoU13.11-201ENST00000459219 104 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 RPS27P21-201ENST00000486977 252 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 uc_338.1-201ENST00000612113 180 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 U1.36-201ENST00000620684 176 ntBASIC2.9□□□□□ -1.95
USB1Q9BQ65 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
USB1Q9BQ65 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
USB1Q9BQ65 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
USB1Q9BQ65 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
USB1Q9BQ65 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.89□□□□□ -1.95
USB1Q9BQ65 RNU6-1123P-201ENST00000362347 106 ntBASIC2.89□□□□□ -1.95
USB1Q9BQ65 MIR23A-201ENST00000385245 73 ntBASIC2.89□□□□□ -1.95
USB1Q9BQ65 SNRPGP12-201ENST00000449481 213 ntBASIC2.89□□□□□ -1.95
USB1Q9BQ65 RNU7-41P-201ENST00000515917 61 ntBASIC2.89□□□□□ -1.95
USB1Q9BQ65 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.89□□□□□ -1.95
USB1Q9BQ65 MIR4500-201ENST00000579472 76 ntBASIC2.89□□□□□ -1.95
USB1Q9BQ65 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.89□□□□□ -1.95
USB1Q9BQ65 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
USB1Q9BQ65 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.88□□□□□ -1.95
USB1Q9BQ65 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USB1Q9BQ65 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.88□□□□□ -1.95
USB1Q9BQ65 Z98742.3-201ENST00000418637 326 ntBASIC2.88□□□□□ -1.95
USB1Q9BQ65 RNA5SP445-201ENST00000515889 115 ntBASIC2.88□□□□□ -1.95
USB1Q9BQ65 AL161756.2-201ENST00000604597 246 ntBASIC2.88□□□□□ -1.95
USB1Q9BQ65 MIR3651-201ENST00000630427 90 ntBASIC2.88□□□□□ -1.95
USB1Q9BQ65 MIR622-201ENST00000638396 96 ntBASIC2.88□□□□□ -1.95
USB1Q9BQ65 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
USB1Q9BQ65 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 Y_RNA.508-201ENST00000384502 114 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 RNA5SP100-201ENST00000410903 110 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 RNA5SP59-201ENST00000410922 110 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 AC009474.2-201ENST00000451383 136 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 RNU7-85P-201ENST00000458851 63 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 AC004223.1-201ENST00000479840 271 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 AC114801.3-201ENST00000510231 177 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 RNU6-322P-201ENST00000516010 103 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 SNORA74D-201ENST00000516404 141 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 RNU6-850P-201ENST00000516934 103 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 MIR7112-201ENST00000616126 65 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 MIR8057-201ENST00000620957 69 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 MIR6733-201ENST00000635723 61 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 AL161431.1-201ENST00000618966 4205 ntBASIC2.87□□□□□ -1.95
USB1Q9BQ65 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.87□□□□□ -1.95
USB1Q9BQ65 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
USB1Q9BQ65 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USB1Q9BQ65 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USB1Q9BQ65 RNU6-360P-201ENST00000390944 104 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 RN7SL75P-201ENST00000461926 281 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 RNU6-557P-201ENST00000516842 110 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 AC138749.4-201ENST00000563970 127 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 DEFB122-202ENST00000569013 197 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 AC073476.4-201ENST00000628409 72 ntBASIC2.86□□□□□ -1.95
USB1Q9BQ65 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
USB1Q9BQ65 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.85□□□□□ -1.95
USB1Q9BQ65 RNU6-525P-201ENST00000363685 104 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 RNU6-380P-201ENST00000410207 107 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 snoU13.2-201ENST00000459201 104 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 Y_RNA.648-201ENST00000459455 110 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 SNORA31.15-201ENST00000516771 132 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.85□□□□□ -1.95
USB1Q9BQ65 MIR4658-201ENST00000584344 65 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 Y_RNA.788-201ENST00000622394 112 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 WWP1P1-201ENST00000466609 2769 ntBASIC2.85□□□□□ -1.95
USB1Q9BQ65 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.85□□□□□ -1.95
USB1Q9BQ65 RNU6-203P-201ENST00000384038 104 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 MIR653-201ENST00000385279 96 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 AC244023.1-201ENST00000426884 112 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 RNU6-523P-201ENST00000516304 54 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 SNORA31.17-201ENST00000516953 127 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 MIR4796-201ENST00000580742 81 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 AC242498.1-201ENST00000604134 111 ntBASIC2.84□□□□□ -1.95
USB1Q9BQ65 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.84□□□□□ -1.95
USB1Q9BQ65 MIRLET7A1-201ENST00000362295 80 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 181.5 ms