Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-241P-201ENST00000391148 104 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-1190P-201ENST00000410811 104 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-177P-201ENST00000411257 104 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 RNU7-197P-201ENST00000458836 62 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 RNA5SP61-201ENST00000516453 100 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 MIR6717-201ENST00000622747 73 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 SNORD38B-202ENST00000625943 69 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 AC008163.1-202ENST00000636004 2889 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 MIR377-201ENST00000362145 69 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RNY1P11-201ENST00000363759 113 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.215-201ENST00000364204 112 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RNY1P6-201ENST00000384193 109 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-125P-201ENST00000384505 107 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 SNORA26.6-201ENST00000391256 115 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RPS3AP1-201ENST00000413190 320 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 AC090844.1-201ENST00000422019 156 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RNU7-45P-201ENST00000459460 63 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RNU7-200P-201ENST00000516105 62 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 SNORA25.12-201ENST00000516202 82 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 SNORA25.15-201ENST00000516487 89 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-255P-201ENST00000516957 105 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 MIR4264-201ENST00000583520 66 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 AC011603.4-201ENST00000611325 277 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 AC021613.1-201ENST00000623880 111 ntBASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.25□□□□□ -2.21
CCDC28AQ8IWP9 U8.1-201ENST00000362843 134 ntBASIC1.24□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.354-201ENST00000365448 111 ntBASIC1.24□□□□□ -2.21
CCDC28AQ8IWP9 RNU7-40P-201ENST00000516397 64 ntBASIC1.24□□□□□ -2.21
CCDC28AQ8IWP9 RNU2-60P-201ENST00000517290 128 ntBASIC1.24□□□□□ -2.21
CCDC28AQ8IWP9 MIR7843-201ENST00000622274 79 ntBASIC1.24□□□□□ -2.21
CCDC28AQ8IWP9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC28AQ8IWP9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-654P-201ENST00000364373 107 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.430-201ENST00000384081 110 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 MIR19B1-201ENST00000384829 87 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 AL603914.1-201ENST00000401964 204 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-602P-201ENST00000411155 105 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 AC002429.1-201ENST00000437672 148 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 RN7SKP179-201ENST00000516126 217 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-295P-201ENST00000516901 104 ntBASIC1.23□□□□□ -2.21
CCDC28AQ8IWP9 RNY1P5-201ENST00000383890 115 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.488-201ENST00000384403 102 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 MIR618-201ENST00000385287 98 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-460P-201ENST00000391158 108 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-893P-201ENST00000458841 100 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.690-201ENST00000516603 95 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-113P-201ENST00000516653 101 ntBASIC1.22□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-349P-201ENST00000362402 107 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.168-201ENST00000363740 102 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 SNORD113.3-201ENST00000364630 78 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 RNU4-16P-201ENST00000364737 141 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-1062P-201ENST00000383908 107 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 SNORA2B-201ENST00000384583 137 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 MIR569-201ENST00000385228 96 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.686-201ENST00000516548 134 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 RNA5SP404-201ENST00000517118 132 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 MIR4255-201ENST00000579351 72 ntBASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.21□□□□□ -2.22
CCDC28AQ8IWP9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 SNORA22.1-201ENST00000362701 134 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNU1-124P-201ENST00000363861 145 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-915P-201ENST00000364943 103 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-690P-201ENST00000365242 106 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-205P-201ENST00000390858 107 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 SNORD111-201ENST00000408139 94 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNA5SP95-201ENST00000410319 137 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 AC244023.1-201ENST00000426884 112 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNU1-41P-201ENST00000516161 162 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 RNU1-48P-201ENST00000516400 162 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 AC036111.3-201ENST00000526389 112 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 AC023827.1-201ENST00000569247 97 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 AC242498.1-201ENST00000604134 111 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 AC106800.4-201ENST00000614905 153 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 MIR6841-201ENST00000637129 72 ntBASIC1.2□□□□□ -2.22
CCDC28AQ8IWP9 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.343-201ENST00000365354 112 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.420-201ENST00000384043 110 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.506-201ENST00000384494 102 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 U8.13-201ENST00000390842 128 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 SNORA26.9-201ENST00000391322 122 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 snoU13.26-201ENST00000459452 105 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 AP001328.1-201ENST00000528550 176 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 SNORD53B-201ENST00000577887 78 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 HSPE1P19-201ENST00000603327 295 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 AP001340.1-201ENST00000624405 217 ntBASIC1.19□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-580P-201ENST00000365159 107 ntBASIC1.18□□□□□ -2.22
CCDC28AQ8IWP9 MIR758-201ENST00000390227 88 ntBASIC1.18□□□□□ -2.22
CCDC28AQ8IWP9 MIR1304-201ENST00000408243 91 ntBASIC1.18□□□□□ -2.22
CCDC28AQ8IWP9 snoU13.15-201ENST00000459407 104 ntBASIC1.18□□□□□ -2.22
CCDC28AQ8IWP9 MIR8081-201ENST00000611533 95 ntBASIC1.18□□□□□ -2.22
CCDC28AQ8IWP9 MIR6845-201ENST00000613182 61 ntBASIC1.18□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-309P-201ENST00000364573 106 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 MIR200A-201ENST00000384875 90 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 RNU7-62P-201ENST00000458856 62 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.651-201ENST00000459380 103 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms