Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNORD115-9-201ENST00000362912 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-21-201ENST00000362963 81 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-14-201ENST00000363090 81 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-13-201ENST00000363358 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-41-201ENST00000363608 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-11-201ENST00000363616 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-5-201ENST00000363633 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-39-201ENST00000363694 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-4-201ENST00000363810 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-16-201ENST00000363887 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-6-201ENST00000363942 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-42-201ENST00000364273 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-15-201ENST00000364809 81 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-1-201ENST00000364961 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-26-201ENST00000365067 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-10-201ENST00000365073 81 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORA1.2-201ENST00000365189 134 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-43-201ENST00000365503 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 RNU6-597P-201ENST00000365620 102 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-36-201ENST00000365629 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 Y_RNA.393-201ENST00000383936 102 ntBASIC1□□□□□ -2.25
HOXD4P09016 RNU6-1189P-201ENST00000383958 107 ntBASIC1□□□□□ -2.25
HOXD4P09016 Y_RNA.410-201ENST00000383992 113 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORA70.7-201ENST00000384159 133 ntBASIC1□□□□□ -2.25
HOXD4P09016 Y_RNA.555-201ENST00000384673 110 ntBASIC1□□□□□ -2.25
HOXD4P09016 MT-TR-201ENST00000387439 65 ntBASIC1□□□□□ -2.25
HOXD4P09016 RNU6-1135P-201ENST00000411083 103 ntBASIC1□□□□□ -2.25
HOXD4P09016 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1□□□□□ -2.25
HOXD4P09016 AL591704.2-201ENST00000421658 181 ntBASIC1□□□□□ -2.25
HOXD4P09016 RPS29P28-201ENST00000446439 141 ntBASIC1□□□□□ -2.25
HOXD4P09016 RPL39P39-201ENST00000455840 151 ntBASIC1□□□□□ -2.25
HOXD4P09016 RNU2-13P-201ENST00000515909 113 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-40-201ENST00000606510 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 MIR4791-201ENST00000607666 84 ntBASIC1□□□□□ -2.25
HOXD4P09016 MIR3658-201ENST00000636291 56 ntBASIC1□□□□□ -2.25
HOXD4P09016 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1□□□□□ -2.25
HOXD4P09016 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.99□□□□□ -2.25
HOXD4P09016 Y_RNA.272-201ENST00000364696 102 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 Y_RNA.337-201ENST00000365312 102 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 Y_RNA.440-201ENST00000384120 114 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 AC048334.1-201ENST00000477975 159 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 RNU7-121P-201ENST00000516604 62 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 MIR5197-201ENST00000583721 112 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 AC103810.9-201ENST00000606688 112 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 AC104465.1-201ENST00000611365 139 ntBASIC0.99□□□□□ -2.25
HOXD4P09016 RNA5SP48-201ENST00000363969 126 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 SNORA25.7-201ENST00000364375 127 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 RNU6-1082P-201ENST00000364574 107 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 RNU6-1292P-201ENST00000383856 107 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 SNORA27-201ENST00000384323 126 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 SNORA51.10-201ENST00000384418 136 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 RNU6-342P-201ENST00000384521 104 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 Y_RNA.537-201ENST00000384626 109 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 MIR598-201ENST00000384868 97 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 SNORA40.5-201ENST00000391061 128 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 RNA5SP127-201ENST00000411051 133 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 RPS23P4-201ENST00000487908 423 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 SNORA31.2-201ENST00000516019 134 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 AC243994.1-201ENST00000618627 109 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 PVT1_3.1-201ENST00000620853 95 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 MIR4251-201ENST00000635819 61 ntBASIC0.98□□□□□ -2.25
HOXD4P09016 SNORA25.3-201ENST00000363205 127 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 RNU6-1130P-201ENST00000365434 107 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 SNORA24-201ENST00000384096 131 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 RNU6-804P-201ENST00000384286 107 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 MIR624-201ENST00000385217 97 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 RNU6-394P-201ENST00000410735 107 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 AC107297.1-201ENST00000459991 176 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 OR2A41P-201ENST00000473586 105 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 RPS29P24-201ENST00000486345 171 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 MTND1P7-201ENST00000632801 297 ntBASIC0.97□□□□□ -2.25
HOXD4P09016 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
HOXD4P09016 Y_RNA.180-201ENST00000363867 113 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 RNU6-818P-201ENST00000364837 108 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 SNORD116-18-201ENST00000383961 92 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 SNORA25-201ENST00000384384 134 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 RNU6-1067P-201ENST00000384752 107 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
HOXD4P09016 SNORA75.5-201ENST00000391291 81 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 RNU6-1054P-201ENST00000411293 104 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 AC245047.7-201ENST00000440265 293 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 RNU7-67P-201ENST00000459003 62 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 AL133373.1-201ENST00000497098 94 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 RNU7-40P-201ENST00000516397 64 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 AP003716.2-201ENST00000528260 108 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 DNAJC19P2-201ENST00000593340 302 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 MIR6857-201ENST00000613267 93 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 AC027335.2-201ENST00000624030 375 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 MIR6844-201ENST00000637122 62 ntBASIC0.96□□□□□ -2.26
HOXD4P09016 Y_RNA.8-201ENST00000362353 102 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 RNY1P11-201ENST00000363759 113 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 RNU1-124P-201ENST00000363861 145 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 Y_RNA.398-201ENST00000383952 99 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 MIR548I3-201ENST00000408378 149 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 MIR548I1-201ENST00000408810 149 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 RNU6-588P-201ENST00000410281 105 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 RNU6-998P-201ENST00000515894 101 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 RNU6-958P-201ENST00000516995 106 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms