Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 Y_RNA.7-201ENST00000362352 102 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 Y_RNA.20-201ENST00000362479 113 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 RNY4P28-201ENST00000365281 93 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 SNORD38B-201ENST00000384690 67 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 RNU6-205P-201ENST00000390858 107 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 MIR548J-201ENST00000408833 112 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 RNU2-64P-201ENST00000411315 191 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 MTND1P19-201ENST00000511780 315 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 Y_RNA.797-201ENST00000515977 94 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 RNU6-1110P-201ENST00000516462 101 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 AC011921.3-201ENST00000605540 361 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 AC022709.1-201ENST00000615967 87 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 7SK.10-201ENST00000621414 298 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 SNORD38B-202ENST00000625943 69 ntBASIC0.97□□□□□ -2.25
HOXC11O43248 MIR1-1-201ENST00000362147 71 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 MIR302B-201ENST00000362188 73 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 MIR342-201ENST00000362212 99 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 RNU6-574P-201ENST00000384265 107 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 Y_RNA.542-201ENST00000384641 111 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 SNORD77.3-201ENST00000391113 65 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 RNU6-493P-201ENST00000391321 108 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 AL138752.1-201ENST00000452964 351 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 RNU6-561P-201ENST00000516222 102 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 RNY3P16-201ENST00000516338 101 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 RNU6-1223P-201ENST00000517124 104 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 MIR3973-201ENST00000579824 107 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 MIR4503-201ENST00000582187 83 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 MIR6734-201ENST00000621166 68 ntBASIC0.96□□□□□ -2.26
HOXC11O43248 Y_RNA.23-201ENST00000362496 106 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 Y_RNA.193-201ENST00000363979 102 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 SNORA1.1-201ENST00000364671 133 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 SNORA20.1-201ENST00000364790 130 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 Y_RNA.452-201ENST00000384202 108 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 RNU6-125P-201ENST00000384505 107 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 MIR608-201ENST00000384820 100 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 RNU4-43P-201ENST00000410628 137 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 RNU2-11P-201ENST00000459191 187 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 RNU4-71P-201ENST00000516258 113 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 MIR3129-201ENST00000581095 76 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 MIR3128-201ENST00000581957 66 ntBASIC0.95□□□□□ -2.26
HOXC11O43248 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
HOXC11O43248 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
HOXC11O43248 RNU6-923P-201ENST00000364753 107 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 Y_RNA.354-201ENST00000365448 111 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 SNORA1-201ENST00000384107 130 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 Y_RNA.440-201ENST00000384120 114 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 Y_RNA.539-201ENST00000384635 107 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 MIR100-201ENST00000385259 80 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 RNU6-578P-201ENST00000390980 103 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.94□□□□□ -2.26
HOXC11O43248 RNU6-998P-201ENST00000515894 101 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 Y_RNA.680-201ENST00000516441 93 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 AL162730.1-201ENST00000605734 292 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 RNU2-4P-201ENST00000606190 192 ntBASIC0.94□□□□□ -2.26
HOXC11O43248 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
HOXC11O43248 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.93□□□□□ -2.26
HOXC11O43248 Y_RNA.121-201ENST00000363309 113 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 Y_RNA.351-201ENST00000365436 96 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 RNU6-913P-201ENST00000390913 95 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 MIR548I3-201ENST00000408378 149 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 Y_RNA.618-201ENST00000410949 107 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 Y_RNA.626-201ENST00000411288 95 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.93□□□□□ -2.26
HOXC11O43248 RNU7-80P-201ENST00000459562 61 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 RNU6-1023P-201ENST00000516137 106 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 SNORD116-25-201ENST00000516517 92 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 MIR3149-201ENST00000584629 83 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 MIR8055-201ENST00000610739 97 ntBASIC0.93□□□□□ -2.26
HOXC11O43248 RNU6-580P-201ENST00000365159 107 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 Y_RNA.454-201ENST00000384224 113 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 RNU6-463P-201ENST00000384340 107 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 RNU4-70P-201ENST00000384579 139 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 SNORD58.1-201ENST00000391313 66 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 AC090844.1-201ENST00000422019 156 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 RNU7-62P-201ENST00000458856 62 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 AC108706.1-201ENST00000611053 297 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 Z97988.1-201ENST00000637697 135 ntBASIC0.92□□□□□ -2.26
HOXC11O43248 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.92□□□□□ -2.26
HOXC11O43248 Y_RNA.144-201ENST00000363521 113 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 RNU6-1292P-201ENST00000383856 107 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 MIR1827-201ENST00000408549 66 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 RNA5SP261-201ENST00000410536 106 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 AC113410.1-201ENST00000505029 247 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 AC004817.2-201ENST00000561794 651 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 MIR378D2-201ENST00000580636 98 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 AL353765.1-201ENST00000605514 183 ntBASIC0.91□□□□□ -2.26
HOXC11O43248 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
HOXC11O43248 Y_RNA.60-201ENST00000362831 98 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 Y_RNA.182-201ENST00000363880 111 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 Y_RNA.307-201ENST00000365022 117 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 RNU6-934P-201ENST00000365154 107 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 Y_RNA.447-201ENST00000384184 113 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 Y_RNA.571-201ENST00000384753 98 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 HMGN1P33-201ENST00000432945 451 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 RNU7-70P-201ENST00000516941 66 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 CYP3A137P-201ENST00000562436 69 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 256.4 ms