Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RNU6-1190P-201ENST00000410811 104 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 RNU2-11P-201ENST00000459191 187 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 RNU6-113P-201ENST00000516653 101 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 MIR4308-201ENST00000580634 81 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 AP000753.3-201ENST00000604083 169 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 AL162730.1-201ENST00000605734 292 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 MIR376A2-201ENST00000636782 80 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.224-201ENST00000364308 111 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 RNU1-36P-201ENST00000365130 165 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 SNORA24-201ENST00000384096 131 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.452-201ENST00000384202 108 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 RNU6-578P-201ENST00000390980 103 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 SNORD111-201ENST00000408139 94 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 RNU6-613P-201ENST00000410412 108 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 AL035398.1-201ENST00000430869 322 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 SEPT7P4-201ENST00000437076 306 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 FABP5P4-201ENST00000437203 171 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 AC067940.1-201ENST00000458411 300 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 RNU7-45P-201ENST00000459460 63 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 RNU7-53P-201ENST00000516705 60 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 AC108706.1-201ENST00000611053 297 ntBASIC0.78□□□□□ -2.28
NKX6-3A6NJ46 MIR373-201ENST00000362273 69 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.440-201ENST00000384120 114 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 RNU6-463P-201ENST00000384340 107 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.478-201ENST00000384358 107 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 MIR532-201ENST00000385025 91 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 SNORD83.1-201ENST00000411362 77 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 RNA5SP255-201ENST00000516370 107 ntBASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
NKX6-3A6NJ46 MIR302B-201ENST00000362188 73 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.351-201ENST00000365436 96 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 RNU4-70P-201ENST00000384579 139 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.571-201ENST00000384753 98 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 MIR520E-201ENST00000384867 87 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 MIR518E-201ENST00000385252 88 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 AC244023.1-201ENST00000426884 112 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 RNU7-73P-201ENST00000458743 63 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 RNU6-1023P-201ENST00000516137 106 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 RNU4-71P-201ENST00000516258 113 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 AC097639.2-201ENST00000603159 172 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 AC242498.1-201ENST00000604134 111 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 AC211469.2-201ENST00000605461 205 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 MIR6857-201ENST00000613267 93 ntBASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.76□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.168-201ENST00000363740 102 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 SNORA1.1-201ENST00000364671 133 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.410-201ENST00000383992 113 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 MIR100-201ENST00000385259 80 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 MIR548I3-201ENST00000408378 149 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 RNU7-96P-201ENST00000459535 64 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 RNU6-998P-201ENST00000515894 101 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 AL596211.1-201ENST00000569873 2277 ntBASIC0.75□□□□□ -2.29
NKX6-3A6NJ46 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 SNORD38B-201ENST00000384690 67 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 AC006461.1-201ENST00000412637 326 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 RNU7-62P-201ENST00000458856 62 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 MIR4653-201ENST00000585107 83 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 AC013244.2-201ENST00000603396 103 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 SNORD38B-202ENST00000625943 69 ntBASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.74□□□□□ -2.29
NKX6-3A6NJ46 MIR1-1-201ENST00000362147 71 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 SNORD114-2-201ENST00000363953 78 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 RNU6-934P-201ENST00000365154 107 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 RNU6-1336P-201ENST00000383886 109 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.508-201ENST00000384502 114 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 SNORD58.1-201ENST00000391313 66 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 RNU2-64P-201ENST00000411315 191 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 PSMC1P5-201ENST00000512850 177 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 SNORD116-25-201ENST00000516517 92 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 MIR4771-2-201ENST00000577758 74 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 MIR378D2-201ENST00000580636 98 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 MIR4771-1-201ENST00000582617 74 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 MIR4264-201ENST00000583520 66 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 SNORA4-201ENST00000584302 138 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 MIR8055-201ENST00000610739 97 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 uc_338.6-201ENST00000613544 171 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 U6.106-201ENST00000636360 105 ntBASIC0.73□□□□□ -2.29
NKX6-3A6NJ46 AC010332.2-201ENST00000613083 1904 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.83-201ENST00000363005 113 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.200-201ENST00000364018 102 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.355-201ENST00000365462 98 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 RNU6-47P-201ENST00000383866 107 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 MIR608-201ENST00000384820 100 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 SNORD12C-201ENST00000386307 89 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 MT-TN-201ENST00000387400 73 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 RNU4-43P-201ENST00000410628 137 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.618-201ENST00000410949 107 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms