Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SENP3Q9H4L4 MAPK10-303ENST00000641324 3959 ntBASIC5.7□□□□□ -1.5
SENP3Q9H4L4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3Q9H4L4 RNA5SP399-201ENST00000364003 117 ntBASIC5.7□□□□□ -1.5
SENP3Q9H4L4 SNORA41B-201ENST00000384785 128 ntBASIC5.7□□□□□ -1.5
SENP3Q9H4L4 RNU6-696P-201ENST00000390834 107 ntBASIC5.7□□□□□ -1.5
SENP3Q9H4L4 AP004217.1-201ENST00000480579 346 ntBASIC5.7□□□□□ -1.5
SENP3Q9H4L4 RPL29P14-201ENST00000495837 428 ntBASIC5.7□□□□□ -1.5
SENP3Q9H4L4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3Q9H4L4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3Q9H4L4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 RPS26P2-201ENST00000440331 348 ntBASIC5.69□□□□□ -1.5
SENP3Q9H4L4 5S_rRNA.15-201ENST00000611169 127 ntBASIC5.69□□□□□ -1.5
SENP3Q9H4L4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SENP3Q9H4L4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 MIR653-201ENST00000385279 96 ntBASIC5.68□□□□□ -1.5
SENP3Q9H4L4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SENP3Q9H4L4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.67□□□□□ -1.5
SENP3Q9H4L4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3Q9H4L4 RNU1-138P-201ENST00000384093 164 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 MIR921-201ENST00000401133 56 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 MIR1179-201ENST00000408703 91 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 MIR1289-1-201ENST00000408836 144 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 RNU7-143P-201ENST00000516781 65 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 MIR4660-201ENST00000583549 74 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 MIR8069-1-201ENST00000616627 86 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 MIR8069-2-201ENST00000621412 86 ntBASIC5.67□□□□□ -1.5
SENP3Q9H4L4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3Q9H4L4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3Q9H4L4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3Q9H4L4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SENP3Q9H4L4 RNU6-986P-201ENST00000363133 102 ntBASIC5.66□□□□□ -1.5
SENP3Q9H4L4 RNU6-112P-201ENST00000363599 104 ntBASIC5.66□□□□□ -1.5
SENP3Q9H4L4 RNU6-990P-201ENST00000364385 104 ntBASIC5.66□□□□□ -1.5
SENP3Q9H4L4 RNU6-1162P-201ENST00000384443 104 ntBASIC5.66□□□□□ -1.5
SENP3Q9H4L4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC5.66□□□□□ -1.5
SENP3Q9H4L4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SENP3Q9H4L4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SENP3Q9H4L4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.65□□□□□ -1.5
SENP3Q9H4L4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.65□□□□□ -1.5
SENP3Q9H4L4 HMGN2P27-201ENST00000427352 270 ntBASIC5.65□□□□□ -1.5
SENP3Q9H4L4 RN7SL274P-201ENST00000492268 272 ntBASIC5.65□□□□□ -1.5
SENP3Q9H4L4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC5.65□□□□□ -1.5
SENP3Q9H4L4 AC104984.5-201ENST00000586878 94 ntBASIC5.65□□□□□ -1.5
SENP3Q9H4L4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.65□□□□□ -1.51
SENP3Q9H4L4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SENP3Q9H4L4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3Q9H4L4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3Q9H4L4 RNU6-301P-201ENST00000384277 107 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 SNORD42B-201ENST00000458893 67 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 RNU7-26P-201ENST00000458980 63 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 RNU6-765P-201ENST00000516916 99 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 DEFB122-202ENST00000569013 197 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 AC006386.2-201ENST00000624491 75 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 AC012005.1-201ENST00000624575 75 ntBASIC5.64□□□□□ -1.51
SENP3Q9H4L4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3Q9H4L4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3Q9H4L4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3Q9H4L4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3Q9H4L4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SENP3Q9H4L4 MIR548O2-201ENST00000616090 70 ntBASIC5.63□□□□□ -1.51
SENP3Q9H4L4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SENP3Q9H4L4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SENP3Q9H4L4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SENP3Q9H4L4 SNORA60-201ENST00000362396 134 ntBASIC5.62□□□□□ -1.51
SENP3Q9H4L4 RNU7-185P-201ENST00000459215 60 ntBASIC5.62□□□□□ -1.51
SENP3Q9H4L4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.62□□□□□ -1.51
SENP3Q9H4L4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 MIR377-201ENST00000362145 69 ntBASIC5.61□□□□□ -1.51
SENP3Q9H4L4 SNORA3.3-201ENST00000408712 125 ntBASIC5.61□□□□□ -1.51
SENP3Q9H4L4 AC025518.1-201ENST00000479856 347 ntBASIC5.61□□□□□ -1.51
SENP3Q9H4L4 RNU7-13P-201ENST00000516413 62 ntBASIC5.61□□□□□ -1.51
SENP3Q9H4L4 SNORA31.26-201ENST00000517250 137 ntBASIC5.61□□□□□ -1.51
SENP3Q9H4L4 U6.103-201ENST00000637085 61 ntBASIC5.61□□□□□ -1.51
SENP3Q9H4L4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
SENP3Q9H4L4 AC139713.2-215ENST00000641428 5037 ntBASIC5.6□□□□□ -1.51
SENP3Q9H4L4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.6□□□□□ -1.51
SENP3Q9H4L4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC5.6□□□□□ -1.51
SENP3Q9H4L4 RNU6-1123P-201ENST00000362347 106 ntBASIC5.6□□□□□ -1.51
SENP3Q9H4L4 MIR1257-201ENST00000408490 117 ntBASIC5.6□□□□□ -1.51
SENP3Q9H4L4 U2.7-201ENST00000619197 100 ntBASIC5.6□□□□□ -1.51
SENP3Q9H4L4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SENP3Q9H4L4 RNA5SP245-201ENST00000364239 121 ntBASIC5.59□□□□□ -1.51
SENP3Q9H4L4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SENP3Q9H4L4 RNU6-894P-201ENST00000517094 105 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 249.8 ms