Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 SNORD115-28-201ENST00000363931 81 ntBASIC-2.46□□□□□ -2.8
CCDC88BA6NC98 RNU6-1028P-201ENST00000517164 93 ntBASIC-2.46□□□□□ -2.8
CCDC88BA6NC98 AC005771.1-201ENST00000585581 349 ntBASIC-2.46□□□□□ -2.8
CCDC88BA6NC98 MIR302B-201ENST00000362188 73 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 RNU6-228P-201ENST00000362700 106 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 RNU6-169P-201ENST00000365336 107 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 RNU6-933P-201ENST00000384424 107 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 AC084290.1-201ENST00000434995 374 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 AL133215.3-201ENST00000609801 448 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 AC006386.1-201ENST00000619436 415 ntBASIC-2.47□□□□□ -2.81
CCDC88BA6NC98 SNORA18-201ENST00000384416 132 ntBASIC-2.48□□□□□ -2.81
CCDC88BA6NC98 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.48□□□□□ -2.81
CCDC88BA6NC98 MIR548A2-201ENST00000384956 97 ntBASIC-2.48□□□□□ -2.81
CCDC88BA6NC98 RNU6-551P-201ENST00000516661 103 ntBASIC-2.48□□□□□ -2.81
CCDC88BA6NC98 CPDP1-201ENST00000579660 283 ntBASIC-2.48□□□□□ -2.81
CCDC88BA6NC98 MIR410-201ENST00000362222 80 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 RNU6-164P-201ENST00000364604 103 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 RNU4-20P-201ENST00000365601 151 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 SNORD115.1-201ENST00000391109 76 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 RNU2-51P-201ENST00000410708 197 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 RNU6-938P-201ENST00000411285 103 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 MTND2P30-201ENST00000456663 382 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 uc_338.11-201ENST00000619132 160 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 AC073534.2-201ENST00000620377 381 ntBASIC-2.49□□□□□ -2.81
CCDC88BA6NC98 Y_RNA.229-201ENST00000364347 113 ntBASIC-2.5□□□□□ -2.81
CCDC88BA6NC98 SNORD115-27-201ENST00000364430 82 ntBASIC-2.5□□□□□ -2.81
CCDC88BA6NC98 RNU6-1329P-201ENST00000365664 107 ntBASIC-2.5□□□□□ -2.81
CCDC88BA6NC98 RNU2-14P-201ENST00000411053 191 ntBASIC-2.5□□□□□ -2.81
CCDC88BA6NC98 MTATP6P20-201ENST00000414147 562 ntBASIC-2.5□□□□□ -2.81
CCDC88BA6NC98 MIR548AG2-201ENST00000581228 64 ntBASIC-2.5□□□□□ -2.81
CCDC88BA6NC98 Y_RNA.367-201ENST00000365544 101 ntBASIC-2.51□□□□□ -2.81
CCDC88BA6NC98 AC016550.1-201ENST00000505348 785 ntBASIC-2.51□□□□□ -2.81
CCDC88BA6NC98 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-2.51□□□□□ -2.81
CCDC88BA6NC98 AC124312.5-201ENST00000604451 268 ntBASIC-2.51□□□□□ -2.81
CCDC88BA6NC98 AL158063.1-201ENST00000615349 536 ntBASIC-2.51□□□□□ -2.81
CCDC88BA6NC98 RNY1P2-201ENST00000364820 117 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 MIR1278-201ENST00000408753 81 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 AC245884.10-201ENST00000597355 337 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 AL607023.1-201ENST00000620045 248 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 AL078595.1-201ENST00000404458 226 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 RNU6-998P-201ENST00000515894 101 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 RNU7-79P-201ENST00000516082 62 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 MIR5188-201ENST00000583467 113 ntBASIC-2.52□□□□□ -2.81
CCDC88BA6NC98 Y_RNA.97-201ENST00000363094 102 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 RNU6-312P-201ENST00000364629 107 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 RNU6-533P-201ENST00000384144 107 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 Y_RNA.456-201ENST00000384232 111 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 RNU6-1246P-201ENST00000391064 107 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 AC097635.1-201ENST00000450678 155 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 RNU7-96P-201ENST00000459535 64 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 AC068339.1-201ENST00000526965 141 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 AC245505.1-201ENST00000556398 224 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 MIR4703-201ENST00000577728 79 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 MIR2681-201ENST00000581814 105 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 MIR548AY-201ENST00000617669 107 ntBASIC-2.53□□□□□ -2.81
CCDC88BA6NC98 SNORD115-30-201ENST00000364117 82 ntBASIC-2.54□□□□□ -2.82
CCDC88BA6NC98 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-2.54□□□□□ -2.82
CCDC88BA6NC98 RNU6-625P-201ENST00000459412 107 ntBASIC-2.54□□□□□ -2.82
CCDC88BA6NC98 RNU6-334P-201ENST00000517072 102 ntBASIC-2.54□□□□□ -2.82
CCDC88BA6NC98 AL133173.2-201ENST00000614270 90 ntBASIC-2.54□□□□□ -2.82
CCDC88BA6NC98 AL138960.2-201ENST00000625145 535 ntBASIC-2.54□□□□□ -2.82
CCDC88BA6NC98 RNU6-571P-201ENST00000384128 107 ntBASIC-2.55□□□□□ -2.82
CCDC88BA6NC98 RNU6-1310P-201ENST00000384153 107 ntBASIC-2.55□□□□□ -2.82
CCDC88BA6NC98 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-2.55□□□□□ -2.82
CCDC88BA6NC98 RNU6-1208P-201ENST00000459588 107 ntBASIC-2.55□□□□□ -2.82
CCDC88BA6NC98 AC016911.1-201ENST00000613297 452 ntBASIC-2.55□□□□□ -2.82
CCDC88BA6NC98 RNU6-1233P-201ENST00000362922 102 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU6-1323P-201ENST00000384025 107 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU6-413P-201ENST00000384115 107 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU6-1145P-201ENST00000384246 107 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU6-429P-201ENST00000384582 108 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU6-1086P-201ENST00000410930 100 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 AC108019.1-201ENST00000512540 175 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 SNORD36C-201ENST00000516733 66 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU7-116P-201ENST00000516940 62 ntBASIC-2.56□□□□□ -2.82
CCDC88BA6NC98 RNU6-524P-201ENST00000384270 107 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 MIR496-201ENST00000385226 102 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 AL031003.1-201ENST00000404229 172 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 CHEK2P4-201ENST00000450340 246 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 TPTE2P5-203ENST00000458118 728 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 RNU7-175P-201ENST00000515915 61 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 SCARNA17.3-201ENST00000516381 125 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 UBE2V2P2-201ENST00000587677 504 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 RN7SKP299-201ENST00000606679 301 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 AC122108.2-201ENST00000611946 526 ntBASIC-2.57□□□□□ -2.82
CCDC88BA6NC98 RNY1P16-201ENST00000363063 111 ntBASIC-2.58□□□□□ -2.82
CCDC88BA6NC98 Y_RNA.190-201ENST00000363964 101 ntBASIC-2.58□□□□□ -2.82
CCDC88BA6NC98 RNU4-70P-201ENST00000384579 139 ntBASIC-2.58□□□□□ -2.82
CCDC88BA6NC98 AC004467.1-201ENST00000615678 330 ntBASIC-2.58□□□□□ -2.82
CCDC88BA6NC98 MIR1-2-201ENST00000384961 85 ntBASIC-2.58□□□□□ -2.82
CCDC88BA6NC98 Y_RNA.14-201ENST00000362415 103 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 RNU6-83P-201ENST00000384568 112 ntBASIC-2.59□□□□□ -2.82
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms