Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 Y_RNA.537-201ENST00000384626 109 ntBASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 MIR1262-201ENST00000408276 93 ntBASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 RNA5SP356-201ENST00000515972 94 ntBASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 AC133485.1-201ENST00000567176 124 ntBASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 MIR8055-201ENST00000610739 97 ntBASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC61Q9Y6R9 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 AC093850.1-201ENST00000454121 251 ntBASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 RNA5SP168-201ENST00000516642 112 ntBASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 SNORD14A-201ENST00000606526 91 ntBASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC61Q9Y6R9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 RNU6-1241P-201ENST00000384536 107 ntBASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 SNORD28B-201ENST00000390993 75 ntBASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 MIR3162-201ENST00000581818 82 ntBASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 AC073476.4-201ENST00000628409 72 ntBASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 AL353746.1-201ENST00000566293 6881 ntBASIC4.2□□□□□ -1.74
CCDC61Q9Y6R9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 AC073325.2-201ENST00000339545 159 ntBASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 SNORD123-201ENST00000459473 70 ntBASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 SNORA31.10-201ENST00000516482 106 ntBASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 GTF3AP2-201ENST00000557014 266 ntBASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC61Q9Y6R9 RNU6-208P-201ENST00000362431 107 ntBASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 SNORA18.5-201ENST00000516616 101 ntBASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
CCDC61Q9Y6R9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 RNA5SP493-201ENST00000364115 91 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 SNORA72.6-201ENST00000384520 129 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 RNU6-950P-201ENST00000384651 107 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 RNA5SP292-201ENST00000390974 118 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 SNORA26.7-201ENST00000391288 122 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 AC074348.1-201ENST00000426503 132 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 AC018868.1-201ENST00000491307 315 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 AC023141.11-201ENST00000508864 202 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 RN7SKP132-201ENST00000516001 208 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 SCARNA20.6-201ENST00000517251 106 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 MIR4536-1-201ENST00000583537 88 ntBASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC61Q9Y6R9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 MIR9-2-201ENST00000384838 87 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 MIR520H-201ENST00000385126 88 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 AC244636.1-201ENST00000421152 228 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 AC015818.7-201ENST00000428754 109 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 AC022018.1-201ENST00000430685 241 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 AC110741.2-201ENST00000605278 268 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 Z97988.1-201ENST00000637697 135 ntBASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC61Q9Y6R9 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC61Q9Y6R9 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.15□□□□□ -1.74
CCDC61Q9Y6R9 RNU7-156P-201ENST00000517214 74 ntBASIC4.15□□□□□ -1.75
CCDC61Q9Y6R9 RNU6-711P-201ENST00000517255 106 ntBASIC4.15□□□□□ -1.75
CCDC61Q9Y6R9 MIR4425-201ENST00000580572 84 ntBASIC4.15□□□□□ -1.75
CCDC61Q9Y6R9 NEAT1_2.1-201ENST00000620525 105 ntBASIC4.15□□□□□ -1.75
CCDC61Q9Y6R9 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 RNA5SP139-201ENST00000364340 117 ntBASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 CD24P4-201ENST00000382840 243 ntBASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 RNU6-851P-201ENST00000384565 107 ntBASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 RNU4-83P-201ENST00000410863 133 ntBASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 AC005520.4-201ENST00000604337 90 ntBASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC61Q9Y6R9 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 RNU6-23P-201ENST00000363283 107 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 RNY1P2-201ENST00000364820 117 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 SNORA25B-201ENST00000365507 128 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 SNORA8.1-201ENST00000384250 140 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 AC105272.1-201ENST00000438604 198 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 AC023790.1-201ENST00000482174 347 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 CYP3A52P-201ENST00000563326 91 ntBASIC4.13□□□□□ -1.75
CCDC61Q9Y6R9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC61Q9Y6R9 RNY1P13-201ENST00000365030 105 ntBASIC4.12□□□□□ -1.75
CCDC61Q9Y6R9 RNU6-1237P-201ENST00000384777 107 ntBASIC4.12□□□□□ -1.75
CCDC61Q9Y6R9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CCDC61Q9Y6R9 RN7SL429P-201ENST00000479090 223 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 206.9 ms