Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 Y_RNA.370-201ENST00000365589 108 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 RNU6-47P-201ENST00000383866 107 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 RNY3P5-201ENST00000384127 102 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 SNORA40.6-201ENST00000391153 128 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 MIR1285-1-201ENST00000408593 84 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 RNU2-70P-201ENST00000410718 179 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 RNU2-55P-201ENST00000411146 174 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 RNA5SP247-201ENST00000411181 105 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 AF228730.3-201ENST00000436691 102 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 AP003716.2-201ENST00000528260 108 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
NKX3-1Q99801 AC130289.1-201ENST00000577321 73 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 MIR4744-201ENST00000581563 82 ntBASIC1.04□□□□□ -2.24
NKX3-1Q99801 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
NKX3-1Q99801 Y_RNA.7-201ENST00000362352 102 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 Y_RNA.37-201ENST00000362606 108 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORD115-28-201ENST00000363931 81 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 Y_RNA.242-201ENST00000364473 110 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORA25.8-201ENST00000364831 128 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORD24-201ENST00000383884 75 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 Y_RNA.401-201ENST00000383965 117 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORA1-201ENST00000384107 130 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORA25-201ENST00000384384 134 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORA75.2-201ENST00000391138 150 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 RNU6-918P-201ENST00000391219 106 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORA75.3-201ENST00000391231 150 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 MIR1185-1-201ENST00000408598 86 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 MIR1302-7-201ENST00000408841 72 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORD36C-201ENST00000516733 66 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 RNU6-388P-201ENST00000517012 105 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 RNU6-389P-201ENST00000517048 105 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SNORA70.22-201ENST00000517160 124 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 AC109810.1-201ENST00000534066 224 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 MIR4791-201ENST00000607666 84 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 AC108706.1-201ENST00000611053 297 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 MIR4251-201ENST00000635819 61 ntBASIC1.03□□□□□ -2.24
NKX3-1Q99801 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
NKX3-1Q99801 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
NKX3-1Q99801 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.03□□□□□ -2.25
NKX3-1Q99801 RNU6-888P-201ENST00000363010 101 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 RNA5SP264-201ENST00000363115 107 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 Y_RNA.200-201ENST00000364018 102 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 Y_RNA.274-201ENST00000364714 101 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 Y_RNA.489-201ENST00000384410 101 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 Y_RNA.571-201ENST00000384753 98 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 RNU6-578P-201ENST00000390980 103 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
NKX3-1Q99801 AL121914.1-201ENST00000450188 156 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 RNU2-13P-201ENST00000515909 113 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 RNA5SP153-201ENST00000516498 76 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 RNU6-504P-201ENST00000516568 104 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 AC022559.1-201ENST00000520905 205 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 MIR3660-201ENST00000584845 100 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.02□□□□□ -2.25
NKX3-1Q99801 AC009779.6-201ENST00000603972 165 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 AC027335.2-201ENST00000624030 375 ntBASIC1.02□□□□□ -2.25
NKX3-1Q99801 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.02□□□□□ -2.25
NKX3-1Q99801 MIR411-201ENST00000362239 96 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 Y_RNA.83-201ENST00000363005 113 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 RNU6-103P-201ENST00000363686 107 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 Y_RNA.182-201ENST00000363880 111 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 Y_RNA.241-201ENST00000364470 117 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 RNU6-728P-201ENST00000365375 104 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 Y_RNA.618-201ENST00000410949 107 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 RPS23P4-201ENST00000487908 423 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 Y_RNA.797-201ENST00000515977 94 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 SNORA31.4-201ENST00000516049 129 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 SNORD79.1-201ENST00000516069 84 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 AC097639.2-201ENST00000603159 172 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 MTND1P7-201ENST00000632801 297 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 MIR376A2-201ENST00000636782 80 ntBASIC1.01□□□□□ -2.25
NKX3-1Q99801 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
NKX3-1Q99801 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1□□□□□ -2.25
NKX3-1Q99801 SNORA25.9-201ENST00000365087 128 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 MIR222-201ENST00000384992 110 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1□□□□□ -2.25
NKX3-1Q99801 AC002429.1-201ENST00000437672 148 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1□□□□□ -2.25
NKX3-1Q99801 SNORA18.4-201ENST00000516440 124 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 RNU6-197P-201ENST00000516680 100 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 MIR548AO-201ENST00000579992 96 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 HSPE1P19-201ENST00000603327 295 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 MIR8070-201ENST00000616510 88 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 AC243994.1-201ENST00000618627 109 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 U6.106-201ENST00000636360 105 ntBASIC1□□□□□ -2.25
NKX3-1Q99801 MIR103A2-201ENST00000362154 78 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 Y_RNA.412-201ENST00000384001 104 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 SNORA51.10-201ENST00000384418 136 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 Y_RNA.537-201ENST00000384626 109 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 MT-TG-201ENST00000387429 68 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
NKX3-1Q99801 SNORD77.3-201ENST00000391113 65 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 RNU4-43P-201ENST00000410628 137 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 RNA5SP404-201ENST00000517118 132 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 AP003484.1-201ENST00000530974 250 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 AC008163.1-202ENST00000636004 2889 ntBASIC0.99□□□□□ -2.25
NKX3-1Q99801 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
NKX3-1Q99801 Y_RNA.121-201ENST00000363309 113 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms