Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR570-201ENST00000384917 97 ntBASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 MIR624-201ENST00000385217 97 ntBASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 PCNPP3-201ENST00000393579 471 ntBASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 RNU6-1054P-201ENST00000411293 104 ntBASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 AL133373.1-201ENST00000497098 94 ntBASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 MIR3646-201ENST00000578301 84 ntBASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
CCDC28AQ8IWP9 SNORA24-201ENST00000384096 131 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 Y_RNA.440-201ENST00000384120 114 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 SNORA75.5-201ENST00000391291 81 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 RN7SKP223-201ENST00000410582 62 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 AC245047.7-201ENST00000440265 293 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 RPS29P29-201ENST00000456396 171 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 RPS29P24-201ENST00000486345 171 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 MIR4513-201ENST00000581077 86 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 DNAJC19P2-201ENST00000593340 302 ntBASIC1.43□□□□□ -2.18
CCDC28AQ8IWP9 Y_RNA.494-201ENST00000384432 111 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 SNORA3.2-201ENST00000408221 125 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 RNU7-67P-201ENST00000459003 62 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 RNU7-96P-201ENST00000459535 64 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 SNORA31.2-201ENST00000516019 134 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 SNORA31.4-201ENST00000516049 129 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 MIR4648-201ENST00000580107 72 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 MIR7974-201ENST00000615835 79 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 MIR6844-201ENST00000637122 62 ntBASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC28AQ8IWP9 ZNF355P-201ENST00000427301 3216 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 Y_RNA.180-201ENST00000363867 113 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 AC048334.1-201ENST00000477975 159 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 RNU7-53P-201ENST00000516705 60 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 MIR376A2-201ENST00000636782 80 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 AC092881.1-201ENST00000638218 2733 ntBASIC1.41□□□□□ -2.18
CCDC28AQ8IWP9 AL161722.3-201ENST00000605789 2983 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 AP000648.3-201ENST00000623539 4507 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.580-201ENST00000391004 95 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 SNORD37.2-201ENST00000391075 66 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-394P-201ENST00000410735 107 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 snoU13.25-201ENST00000458945 104 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 UBL5P3-201ENST00000475112 231 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 AC104465.1-201ENST00000611365 139 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 MTND1P7-201ENST00000632801 297 ntBASIC1.4□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-1082P-201ENST00000364574 107 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-818P-201ENST00000364837 108 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-449P-201ENST00000383914 107 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.454-201ENST00000384224 113 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 MIR150-201ENST00000385048 84 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 AL035398.1-201ENST00000430869 322 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 AC009474.2-201ENST00000451383 136 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNU7-73P-201ENST00000458743 63 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 snoU13.16-201ENST00000459350 104 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNU7-80P-201ENST00000459562 61 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-998P-201ENST00000515894 101 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-958P-201ENST00000516995 106 ntBASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC28AQ8IWP9 RNA5SP264-201ENST00000363115 107 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.351-201ENST00000365436 96 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-1336P-201ENST00000383886 109 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 SNORD26-201ENST00000384147 75 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 SNORA70B-201ENST00000384210 135 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 SNORA59A-201ENST00000459326 152 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 MIR3658-201ENST00000636291 56 ntBASIC1.38□□□□□ -2.19
CCDC28AQ8IWP9 MIR103A2-201ENST00000362154 78 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 SNORA25.3-201ENST00000363205 127 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 SNORD116-18-201ENST00000383961 92 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.464-201ENST00000384282 110 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 MIR320A-201ENST00000385302 82 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 RNU7-70P-201ENST00000516941 66 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 AP003716.2-201ENST00000528260 108 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 MIR3144-201ENST00000579460 79 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 AC131055.1-201ENST00000584626 316 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 PRELID3BP2-201ENST00000605362 201 ntBASIC1.37□□□□□ -2.19
CCDC28AQ8IWP9 MIR342-201ENST00000362212 99 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-209P-201ENST00000384118 107 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 MIR583-201ENST00000384846 75 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 RPS29P23-201ENST00000458635 123 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 RNU2-11P-201ENST00000459191 187 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 RNA5SP182-201ENST00000516064 82 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-1149P-201ENST00000516810 97 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 RNU11-2P-201ENST00000516898 142 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.778-201ENST00000620203 90 ntBASIC1.36□□□□□ -2.19
CCDC28AQ8IWP9 MIR302B-201ENST00000362188 73 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.52-201ENST00000362760 96 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-1130P-201ENST00000365434 107 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-804P-201ENST00000384286 107 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-910P-201ENST00000390844 107 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 MIR548I3-201ENST00000408378 149 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 MIR548I1-201ENST00000408810 149 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-588P-201ENST00000410281 105 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 SCARNA15-202ENST00000516881 127 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 SNORA70.22-201ENST00000517160 124 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms