Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 U8.17-201ENST00000391292 132 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 SNORA79-201ENST00000408376 140 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.32□□□□□ -2.2
SHMT1P34896 Y_RNA.797-201ENST00000515977 94 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 SNORD111.1-201ENST00000516421 86 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 RNU6-388P-201ENST00000517012 105 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 RNU6-389P-201ENST00000517048 105 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 RNU6-165P-201ENST00000517170 99 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 MIR4308-201ENST00000580634 81 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 SNORD45.3-201ENST00000363836 72 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 Y_RNA.634-201ENST00000364811 113 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 SNORA1.2-201ENST00000365189 134 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 SNORD26-201ENST00000384147 75 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU4-70P-201ENST00000384579 139 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 Y_RNA.547-201ENST00000384654 119 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU6-1067P-201ENST00000384752 107 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 Y_RNA.571-201ENST00000384753 98 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU6-578P-201ENST00000390980 103 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU6-693P-201ENST00000516134 107 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU7-25P-201ENST00000516544 62 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 AC130289.1-201ENST00000577321 73 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 RNU2-4P-201ENST00000606190 192 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 AC078938.1-201ENST00000620993 318 ntBASIC1.31□□□□□ -2.2
SHMT1P34896 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.31□□□□□ -2.2
SHMT1P34896 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SHMT1P34896 Y_RNA.355-201ENST00000365462 98 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 RNU4-43P-201ENST00000410628 137 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 AL121914.1-201ENST00000450188 156 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.3□□□□□ -2.2
SHMT1P34896 RNU4-57P-201ENST00000515980 135 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 RNU6-197P-201ENST00000516680 100 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 AC109810.1-201ENST00000534066 224 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 MIR4764-201ENST00000580680 88 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 MIR4295-201ENST00000585286 85 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 AC097639.2-201ENST00000603159 172 ntBASIC1.3□□□□□ -2.2
SHMT1P34896 RNU6-888P-201ENST00000363010 101 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 RNU6-1020P-201ENST00000363684 107 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 Y_RNA.435-201ENST00000384095 112 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 RNU6-847P-201ENST00000411115 108 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 RNU6-1054P-201ENST00000411293 104 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 AL591704.2-201ENST00000421658 181 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.29□□□□□ -2.2
SHMT1P34896 MIR548AR-201ENST00000582191 57 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 AC108706.1-201ENST00000611053 297 ntBASIC1.29□□□□□ -2.2
SHMT1P34896 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.29□□□□□ -2.2
SHMT1P34896 Y_RNA.66-201ENST00000362862 102 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 Y_RNA.182-201ENST00000363880 111 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 SNORD115-28-201ENST00000363931 81 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 Y_RNA.370-201ENST00000365589 108 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 SNORD61-201ENST00000384252 73 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 Y_RNA.508-201ENST00000384502 114 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 RNU6-918P-201ENST00000391219 106 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.28□□□□□ -2.2
SHMT1P34896 AC087499.4-201ENST00000448505 178 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 AC087343.1-201ENST00000477341 475 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 AL133373.1-201ENST00000497098 94 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 RNU6-561P-201ENST00000516222 102 ntBASIC1.28□□□□□ -2.2
SHMT1P34896 Y_RNA.91-201ENST00000363042 107 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 Y_RNA.257-201ENST00000364596 102 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 RNU6-200P-201ENST00000364743 107 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 Y_RNA.297-201ENST00000364950 91 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 MIR518E-201ENST00000385252 88 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 AL138752.1-201ENST00000452964 351 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 AC107297.1-201ENST00000459991 176 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 RNU7-181P-201ENST00000517234 74 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 AC007751.1-201ENST00000529260 376 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 AL096861.1-201ENST00000610899 123 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 AC134878.1-201ENST00000619901 243 ntBASIC1.27□□□□□ -2.21
SHMT1P34896 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.27□□□□□ -2.21
SHMT1P34896 Y_RNA.75-201ENST00000362927 97 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 Y_RNA.274-201ENST00000364714 101 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 RNU6-275P-201ENST00000364910 107 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 RNU6-939P-201ENST00000384634 107 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 MIR520E-201ENST00000384867 87 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 MIR518F-201ENST00000384973 87 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 MIR222-201ENST00000384992 110 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 SNORD28B-201ENST00000390993 75 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.26□□□□□ -2.21
SHMT1P34896 Y_RNA.644-201ENST00000459006 113 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 SNORA31.4-201ENST00000516049 129 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 Y_RNA.674-201ENST00000516362 113 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 RNU6-1270P-201ENST00000517128 108 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 SNORA4-201ENST00000584302 138 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 MIR3192-201ENST00000584920 77 ntBASIC1.26□□□□□ -2.21
SHMT1P34896 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SHMT1P34896 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SHMT1P34896 MIR26B-201ENST00000362251 77 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 RNA5SP48-201ENST00000363969 126 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 Y_RNA.537-201ENST00000384626 109 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 MIR548A2-201ENST00000384956 97 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 AC245047.7-201ENST00000440265 293 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 Y_RNA.700-201ENST00000516806 100 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 SNORD114-21-201ENST00000606412 72 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 MIR7111-201ENST00000619751 72 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 AC008133.2-201ENST00000624540 351 ntBASIC1.25□□□□□ -2.21
SHMT1P34896 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.25□□□□□ -2.21
SHMT1P34896 Y_RNA.37-201ENST00000362606 108 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 RNU6-47P-201ENST00000383866 107 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 339.1 ms