Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU2-55P-201ENST00000411146 174 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 RNU6-1219P-201ENST00000516143 112 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 Y_RNA.666-201ENST00000516187 112 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 RNU6-1299P-201ENST00000516316 100 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 Y_RNA.700-201ENST00000516806 100 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 SNORA81.3-201ENST00000517283 198 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 AP002392.1-201ENST00000537692 208 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 FAM106DP-201ENST00000586416 501 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 U6.106-201ENST00000636360 105 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HOXD4P09016 AL442644.1-201ENST00000454390 3105 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 Y_RNA.75-201ENST00000362927 97 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 Y_RNA.242-201ENST00000364473 110 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 Y_RNA.634-201ENST00000364811 113 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 SNORA2.2-201ENST00000365473 135 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 Y_RNA.785-201ENST00000384290 109 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 MIR15B-201ENST00000385045 98 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 MIR653-201ENST00000385279 96 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 SNORD41-201ENST00000386967 70 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 RNU2-70P-201ENST00000410718 179 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 SNX2P2-201ENST00000424553 323 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 AL121914.1-201ENST00000450188 156 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 RNU7-25P-201ENST00000516544 62 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 RNU6-922P-201ENST00000516753 99 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 AC090049.2-201ENST00000550377 109 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 AC072026.1-201ENST00000605023 201 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 AC015726.2-201ENST00000620112 122 ntBASIC1.12□□□□□ -2.23
HOXD4P09016 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
HOXD4P09016 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.11□□□□□ -2.23
HOXD4P09016 MIR26B-201ENST00000362251 77 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 Y_RNA.66-201ENST00000362862 102 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 SNORD38C-201ENST00000384381 69 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 Y_RNA.540-201ENST00000384638 111 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 MIR136-201ENST00000385207 82 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 MIR613-201ENST00000385248 95 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 MIR548O-201ENST00000408583 114 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 RNU4-43P-201ENST00000410628 137 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 RNU7-120P-201ENST00000459334 63 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 RNU6-197P-201ENST00000516680 100 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 AC097639.2-201ENST00000603159 172 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 AC004792.1-201ENST00000614523 137 ntBASIC1.11□□□□□ -2.23
HOXD4P09016 MIR548A2-201ENST00000384956 97 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 AL451046.2-201ENST00000403074 277 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 RNA5SP153-201ENST00000516498 76 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 RNU6-126P-201ENST00000516685 103 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 RNU6-861P-201ENST00000516745 106 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 SNORA18.7-201ENST00000516910 131 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 RNU6-365P-201ENST00000517113 106 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 RNU6-1270P-201ENST00000517128 108 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 AC007751.1-201ENST00000529260 376 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 MRPS18CP4-201ENST00000535821 231 ntBASIC1.1□□□□□ -2.23
HOXD4P09016 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.1□□□□□ -2.23
HOXD4P09016 RNU6-682P-201ENST00000363843 106 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 SNORD24-201ENST00000383884 75 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 SNORD61-201ENST00000384252 73 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 Y_RNA.547-201ENST00000384654 119 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 MIR518F-201ENST00000384973 87 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 SNORA26-201ENST00000391286 122 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 RNU6-322P-201ENST00000516010 103 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 RNU6-830P-201ENST00000516353 107 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 AC090821.2-201ENST00000523552 176 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 AL513534.2-201ENST00000603836 250 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 AC022709.1-201ENST00000615967 87 ntBASIC1.09□□□□□ -2.23
HOXD4P09016 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.08□□□□□ -2.24
HOXD4P09016 Y_RNA.23-201ENST00000362496 106 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 RNU6-888P-201ENST00000363010 101 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 RNU6-643P-201ENST00000384018 107 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 MIR520E-201ENST00000384867 87 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 MIR7-2-201ENST00000384970 110 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 SNORA79-201ENST00000408376 140 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 RNU2-64P-201ENST00000411315 191 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 SNORD123-201ENST00000459473 70 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.08□□□□□ -2.24
HOXD4P09016 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.08□□□□□ -2.24
HOXD4P09016 RNU4-57P-201ENST00000515980 135 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 RNU6-693P-201ENST00000516134 107 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 RNU6-504P-201ENST00000516568 104 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 SNORA74.3-201ENST00000517108 154 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 AL512310.8-201ENST00000550183 120 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 MIR3668-201ENST00000582138 75 ntBASIC1.08□□□□□ -2.24
HOXD4P09016 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
HOXD4P09016 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.07□□□□□ -2.24
HOXD4P09016 Y_RNA.240-201ENST00000364469 95 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 RNU6-907P-201ENST00000390924 102 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 SNORD28B-201ENST00000390993 75 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 RNU5E-9P-201ENST00000411164 104 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 SEPT7P4-201ENST00000437076 306 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 RPS29P29-201ENST00000456396 171 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 AC074198.2-201ENST00000508153 258 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 SNORD111.1-201ENST00000516421 86 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 RNU6-182P-201ENST00000516970 105 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 RNU7-181P-201ENST00000517234 74 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.07□□□□□ -2.24
HOXD4P09016 MIR4295-201ENST00000585286 85 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 GHRLOS.1-201ENST00000610995 70 ntBASIC1.07□□□□□ -2.24
HOXD4P09016 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.07□□□□□ -2.24
HOXD4P09016 RNU6-312P-201ENST00000364629 107 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 U8.17-201ENST00000391292 132 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms