Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AP001485.1-201ENST00000604799 199 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 AL590808.1-201ENST00000618696 141 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 AC064859.1-201ENST00000624741 174 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 MIR219B-201ENST00000637023 88 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-34-201ENST00000362441 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-12-201ENST00000362583 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-29-201ENST00000362834 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-9-201ENST00000362912 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-21-201ENST00000362963 81 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-14-201ENST00000363090 81 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-13-201ENST00000363358 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-41-201ENST00000363608 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-11-201ENST00000363616 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-5-201ENST00000363633 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-39-201ENST00000363694 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-4-201ENST00000363810 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-16-201ENST00000363887 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-6-201ENST00000363942 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 RNU4-84P-201ENST00000364200 139 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-42-201ENST00000364273 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.241-201ENST00000364470 117 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-15-201ENST00000364809 81 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-1-201ENST00000364961 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-26-201ENST00000365067 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-10-201ENST00000365073 81 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.337-201ENST00000365312 102 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-43-201ENST00000365503 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-36-201ENST00000365629 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORA1-201ENST00000384107 130 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-239P-201ENST00000390990 99 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD28B-201ENST00000390993 75 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 AF228730.3-201ENST00000436691 102 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-165P-201ENST00000517170 99 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 CYP3A52P-201ENST00000563326 91 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 MIR3129-201ENST00000581095 76 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 MIR4672-201ENST00000583126 81 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 SNORD115-40-201ENST00000606510 82 ntBASIC1.5□□□□□ -2.17
CCDC28AQ8IWP9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 SNORA25.7-201ENST00000364375 127 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-597P-201ENST00000365620 102 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-1292P-201ENST00000383856 107 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.441-201ENST00000384123 112 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-907P-201ENST00000390924 102 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-955P-201ENST00000410497 104 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 RNU5E-9P-201ENST00000411164 104 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 UBE2DNL-203ENST00000474922 222 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 MIR4419B-201ENST00000577260 68 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 AL096861.1-201ENST00000610899 123 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 AC008133.2-201ENST00000624540 351 ntBASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC28AQ8IWP9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 RNA5SP48-201ENST00000363969 126 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.393-201ENST00000383936 102 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-1189P-201ENST00000383958 107 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.537-201ENST00000384626 109 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 SNORA40.5-201ENST00000391061 128 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-1135P-201ENST00000411083 103 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-938P-201ENST00000411285 103 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 Z98742.3-201ENST00000418637 326 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 SNORD36C-201ENST00000516733 66 ntBASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.555-201ENST00000384673 110 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 SNORD77.3-201ENST00000391113 65 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 AC074198.2-201ENST00000508153 258 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 RNU7-41P-201ENST00000515917 61 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 AC090821.2-201ENST00000523552 176 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 MIR3192-201ENST00000584920 77 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 MIR8065-201ENST00000620577 100 ntBASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.47□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.150-201ENST00000363562 102 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 SNORA70.7-201ENST00000384159 133 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 RNU6-886P-201ENST00000384319 105 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 SNORA51.10-201ENST00000384418 136 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 AL627390.1-201ENST00000396055 340 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 RNA5SP127-201ENST00000411051 133 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 RPS26P48-201ENST00000491713 339 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 RNU2-13P-201ENST00000515909 113 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 SNORA18.4-201ENST00000516440 124 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 Y_RNA.783-201ENST00000613546 102 ntBASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC28AQ8IWP9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 U8.2-201ENST00000363156 134 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 Y_RNA.272-201ENST00000364696 102 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 SNORA27-201ENST00000384323 126 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 RNU6-768P-201ENST00000384683 107 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 RNU7-121P-201ENST00000516604 62 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 MIR5197-201ENST00000583721 112 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 MIR4791-201ENST00000607666 84 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 AC243994.1-201ENST00000618627 109 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 MIR4251-201ENST00000635819 61 ntBASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC28AQ8IWP9 SNORA64-201ENST00000384674 134 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms