Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SNORD72-201ENST00000390994 80 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 U8.16-201ENST00000391279 133 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 Y_RNA.622-201ENST00000411091 108 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 MRPL35P3-201ENST00000421557 364 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 SNRPGP8-201ENST00000454064 226 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 AC019176.1-201ENST00000518519 225 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 AC108706.1-201ENST00000611053 297 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 AC021506.2-201ENST00000612354 169 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.06□□□□□ -2.24
HOXC4P09017 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
HOXC4P09017 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
HOXC4P09017 RNU4-70P-201ENST00000384579 139 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 RNU6-1031P-201ENST00000384773 107 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 MIR562-201ENST00000384894 95 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 MIR222-201ENST00000384992 110 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 RNU6-578P-201ENST00000390980 103 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 RNU6-1228P-201ENST00000391014 107 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 RNU5E-9P-201ENST00000411164 104 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.05□□□□□ -2.24
HOXC4P09017 RN7SKP164-201ENST00000516138 266 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 Y_RNA.700-201ENST00000516806 100 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 RNU6-182P-201ENST00000516970 105 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 AL358944.1-201ENST00000528537 144 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.05□□□□□ -2.24
HOXC4P09017 MIR4744-201ENST00000581563 82 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 FTX_2.1-201ENST00000618816 94 ntBASIC1.05□□□□□ -2.24
HOXC4P09017 MIR96-201ENST00000362288 78 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 RNU1-93P-201ENST00000364704 169 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 SNORA25.8-201ENST00000364831 128 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 Y_RNA.435-201ENST00000384095 112 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 RNU6-886P-201ENST00000384319 105 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
HOXC4P09017 RNA5SP496-201ENST00000391240 109 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 MIR548I3-201ENST00000408378 149 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 MIR548I1-201ENST00000408810 149 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 RN7SKP200-201ENST00000410564 320 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.04□□□□□ -2.24
HOXC4P09017 RPS29P28-201ENST00000446439 141 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 AC093850.1-201ENST00000454121 251 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 RNU7-34P-201ENST00000459394 64 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.04□□□□□ -2.24
HOXC4P09017 RNA5SP168-201ENST00000516642 112 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 AC109810.1-201ENST00000534066 224 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 AC019288.1-201ENST00000557918 224 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 MIR5688-201ENST00000580619 83 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 AC072026.1-201ENST00000605023 201 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 JPX_2.1-201ENST00000614161 69 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 uc_338.4-201ENST00000616635 176 ntBASIC1.04□□□□□ -2.24
HOXC4P09017 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
HOXC4P09017 Y_RNA.75-201ENST00000362927 97 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 Y_RNA.91-201ENST00000363042 107 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 SNORD45.3-201ENST00000363836 72 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 RNU6-484P-201ENST00000384016 107 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 RNU6-424P-201ENST00000384367 105 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 Y_RNA.486-201ENST00000384398 107 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 MIR194-1-201ENST00000384892 85 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 RNU6-131P-201ENST00000391144 107 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 RNU11-5P-201ENST00000391216 129 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 SNX2P2-201ENST00000424553 323 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 SEPT7P4-201ENST00000437076 306 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 AC114811.1-201ENST00000507207 168 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 Y_RNA.797-201ENST00000515977 94 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 SNORD77.4-201ENST00000516158 81 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 RNU7-149P-201ENST00000516739 59 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 MRPS18CP4-201ENST00000535821 231 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 MIR4709-201ENST00000577272 72 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 MIR4778-201ENST00000577635 80 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 MIR2681-201ENST00000581814 105 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 MIR4762-201ENST00000585261 75 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 AC008507.4-201ENST00000585464 127 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 AL391903.3-201ENST00000612158 163 ntBASIC1.03□□□□□ -2.24
HOXC4P09017 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.03□□□□□ -2.25
HOXC4P09017 Y_RNA.121-201ENST00000363309 113 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 Y_RNA.191-201ENST00000363972 113 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 Y_RNA.240-201ENST00000364469 95 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 U8.5-201ENST00000364528 136 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 RNU6-818P-201ENST00000364837 108 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 RNU6-275P-201ENST00000364910 107 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 MIR15B-201ENST00000385045 98 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 MIR618-201ENST00000385287 98 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 RNA5SP482-201ENST00000391269 118 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 AL034345.1-201ENST00000407768 123 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 AL121914.1-201ENST00000450188 156 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 SNORD45.4-201ENST00000516629 73 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.02□□□□□ -2.25
HOXC4P09017 SNORD114-21-201ENST00000606412 72 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 AC098479.1-201ENST00000609225 154 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 AC104465.1-201ENST00000611365 139 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 Pinc.1-201ENST00000616452 154 ntBASIC1.02□□□□□ -2.25
HOXC4P09017 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
HOXC4P09017 RNU6-1084P-201ENST00000362498 107 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 RNU6-103P-201ENST00000363686 107 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 Y_RNA.270-201ENST00000364693 104 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 RNU6-209P-201ENST00000384118 107 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 Y_RNA.555-201ENST00000384673 110 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 MIR1285-1-201ENST00000408593 84 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 RNU6-1135P-201ENST00000411083 103 ntBASIC1.01□□□□□ -2.25
HOXC4P09017 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.01□□□□□ -2.25
HOXC4P09017 SNRPGP14-201ENST00000435400 219 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 270.4 ms